View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8820_low_10 (Length: 370)
Name: NF8820_low_10
Description: NF8820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8820_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 53336058 - 53335880
Alignment:
| Q |
16 |
atgacgttggtcgttgaatattgtttatgctaaacaacttgtcttctaagctttctgatgaattttcgttaagtggaagatcacaaagtgaaagtgcttc |
115 |
Q |
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| T |
53336058 |
atgacgttggtcgttgaatattgtttatgctaaacaacttgtcttctaagctttctgatgaattttcgttaagtggaagatcacaaagtgaaagtgcttc |
53335959 |
T |
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| Q |
116 |
ttcttc---ttctccaacggattccacctcatcatagtttgagtcttttattatatgaacatgttcatcttccataatg |
191 |
Q |
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| T |
53335958 |
ttcttcttcttctccaacggattccacctcatcatagtttgagtcttttattatatgaacatgttcatcttccataatg |
53335880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 260 - 355
Target Start/End: Complemental strand, 53335811 - 53335716
Alignment:
| Q |
260 |
ggaggaaataatttaatagttttgaagagggtgaagagacagttgttttgttgcgtttatatatgtgtgtgatttttcactatatatatgtgatgt |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53335811 |
ggaggaaataatttaatagttttgaagagggtgaagagacagttgttttgttgcgtttatatatgtgtgtgacttttcactatatatatgtgatgt |
53335716 |
T |
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