View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8820_low_11 (Length: 368)
Name: NF8820_low_11
Description: NF8820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8820_low_11 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 21716332 - 21715992
Alignment:
| Q |
16 |
aaaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacaccattgaatcctcatagcagccttcacagctgaagcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716332 |
aaaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacaccattgaatcctcatagcagccttcacagctgaagcc |
21716233 |
T |
|
| Q |
116 |
ttaacacagaactcaggagtgctagctcttggatagtaaacaacttcaaatggttggttgttagcagccaatttcacagcttccataacatcttcagccc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716232 |
ttaacacagaactcaggagtgctagctcttggatagtaaacaacttcaaatggttggttgttagcagccaatttcacagcttccataacatcttcagccc |
21716133 |
T |
|
| Q |
216 |
tcactctcactcttccactcaaattaccatcaaaacaaccatttctcaatgtcttattctcttctttcaagaaaaaagaaaatgccccaaaaggtccaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716132 |
tcactctcactcttccactcaaattaccatcaaaacaaccatttctcaatgtcttattctcttctttcaagaaaaaagaaaatgccccaaaaggtccaat |
21716033 |
T |
|
| Q |
316 |
tccacaatttacattgttagaaccagaacctgatgtccatc |
356 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21716032 |
tccacaatttacattgttagaaccagaacctgaagtccatc |
21715992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 51742244 - 51742165
Alignment:
| Q |
17 |
aaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacaccattgaatcctcatagcagc |
99 |
Q |
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||||||||||| |||||||| || ||||||| || |||||||| ||| ||| ||||||||||||||||| ||||||||||| |
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| T |
51742244 |
aaccaactaatactagaagaatcctcagttt--aatggcatcttaaac-tcacaccagaacaccattgaattctcatagcagc |
51742165 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 40352106 - 40352322
Alignment:
| Q |
17 |
aaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacaccattgaatcctcatagcagccttcacagctgaagcct |
116 |
Q |
| |
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|||||||||||||||||||| ||||| ||||| || |||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||| || |
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| T |
40352106 |
aaccaactaatcctagaagaatcttcggtttcgaatggcatcttaaacctcatcccagaacaccattgaattctcatagcagctttaacagctgaagtct |
40352205 |
T |
|
| Q |
117 |
taacacagaactcaggagtgctagctcttggatagtaaacaacttcaaatggttggttgttagcagccaatttcacagcttccataacatcttcagccct |
216 |
Q |
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||| ||| ||||||||||| || ||||| ||||| ||||| || ||||||| ||| || ||||||| | | ||| ||||||| | || |||| | || |
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| T |
40352206 |
taatacaaaactcaggagtacttgctctaggataataaactacctcaaatgtttgattactagcagcaagtctcatagcttccttcactgattcaccact |
40352305 |
T |
|
| Q |
217 |
cactctcactcttccac |
233 |
Q |
| |
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|||| |||||||||||| |
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| T |
40352306 |
cactttcactcttccac |
40352322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 42730802 - 42730653
Alignment:
| Q |
16 |
aaaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacaccattgaatcctcatagcagccttcacagctgaagcc |
115 |
Q |
| |
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||||||||||||||||||||| || ||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||| |||| || || | ||| || |
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| T |
42730802 |
aaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgcattgcagatttaactgaagaaacc |
42730703 |
T |
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| Q |
116 |
ttaacacagaactcaggagtgctagctcttggatagtaaacaacttcaaa |
165 |
Q |
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|||||||| || |||||||| |||||||||||||| || ||||| ||||| |
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| T |
42730702 |
ttaacacaaaattcaggagtactagctcttggataatacacaacctcaaa |
42730653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 96421 - 96356
Alignment:
| Q |
16 |
aaaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacacca |
81 |
Q |
| |
|
||||||||| ||||| || ||||| || ||||||| |||||||||||||||||| |||| |||||| |
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|
| T |
96421 |
aaaccaacttatccttgatgagtcctcggtttcaatgggcatcttgaacctcattccaggacacca |
96356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 88413 - 88348
Alignment:
| Q |
16 |
aaaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacacca |
81 |
Q |
| |
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||||||||| ||||| || ||||| || ||||||| || ||||||||||||||| |||| |||||| |
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| T |
88413 |
aaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacacca |
88348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 40869861 - 40869926
Alignment:
| Q |
16 |
aaaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacacca |
81 |
Q |
| |
|
||||||||| ||||| || ||||| || ||||||| |||||||||||||||||| |||| |||||| |
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| T |
40869861 |
aaaccaacttatccttgatgagtcctcggtttcaatgggcatcttgaacctcattccaggacacca |
40869926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 40877870 - 40877935
Alignment:
| Q |
16 |
aaaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacacca |
81 |
Q |
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||||||||| ||||| || ||||| || ||||||| || ||||||||||||||| |||| |||||| |
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| T |
40877870 |
aaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacacca |
40877935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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