View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8820_low_13 (Length: 333)
Name: NF8820_low_13
Description: NF8820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8820_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 89 - 315
Target Start/End: Original strand, 8525319 - 8525534
Alignment:
| Q |
89 |
ccacaccattatgaataaatgattttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaagtaagtgtggatgaaattttaaggaa |
188 |
Q |
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| T |
8525319 |
ccacaccattatgaatatatgattttgtggaaagtgttaccaaatggtttatgtgaatgaa-----------aactaagtgtggatgatattttaaggaa |
8525407 |
T |
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| Q |
189 |
cgcaacatctatatttatatccaaattggaaatacaatattttcagaaacaatatttagtgattgtttttccttggtggaccaacacatagcaacataaa |
288 |
Q |
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| T |
8525408 |
cacaacgtctatatttatatccaaattgaaaatacaatattttcaaaaacaatatttagtgattgtttttccttggtggaccaacacatcgcaacataaa |
8525507 |
T |
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| Q |
289 |
taattgttaatatttctattggaatct |
315 |
Q |
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| T |
8525508 |
taattgttaatatttctattggaatct |
8525534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 25520752 - 25520646
Alignment:
| Q |
110 |
attttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaagtaagtgtggatgaaattttaaggaacgcaacatctatatttatatc |
209 |
Q |
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| T |
25520752 |
attttttggaaagtgttactaaatggtttatgtgaatgaaaaacaatagaaaagtaagtgtggatgaaatgccaagggacacaacgtaaatatttatagc |
25520653 |
T |
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| Q |
210 |
caaattg |
216 |
Q |
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| T |
25520652 |
caaattg |
25520646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 42125916 - 42125982
Alignment:
| Q |
158 |
gaaaagtaagtgtggatgaaattttaaggaacgcaacatctatatttatatccaaattggaaataca |
224 |
Q |
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| T |
42125916 |
gaaaagtaagtgtggatgaaatggtaagaaacacaacctaaatatttatagccaaattgaaaataca |
42125982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 12250641 - 12250710
Alignment:
| Q |
106 |
aatgattttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaagtaagtgtggatgaaat |
179 |
Q |
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| T |
12250641 |
aatgattttgtggaaagtgt----aaatggtttaactgaaagaaaaccaatagaaaagcaagtgtggatgaaat |
12250710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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