View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8820_low_14 (Length: 333)

Name: NF8820_low_14
Description: NF8820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8820_low_14
NF8820_low_14
[»] chr7 (7 HSPs)
chr7 (6-282)||(28885196-28885472)
chr7 (129-282)||(28880607-28880760)
chr7 (283-333)||(28885496-28885546)
chr7 (283-329)||(5516316-5516362)
chr7 (283-329)||(19989093-19989139)
chr7 (31-130)||(28880489-28880590)
chr7 (283-329)||(31448378-31448424)
[»] chr2 (10 HSPs)
chr2 (283-329)||(33810632-33810678)
chr2 (282-333)||(19246494-19246546)
chr2 (283-329)||(9154149-9154195)
chr2 (283-329)||(12457033-12457079)
chr2 (287-329)||(12890280-12890322)
chr2 (283-329)||(43939451-43939497)
chr2 (282-323)||(14949255-14949296)
chr2 (283-329)||(38985141-38985187)
chr2 (283-328)||(21924850-21924895)
chr2 (282-322)||(39028775-39028815)
[»] chr5 (5 HSPs)
chr5 (284-330)||(16725035-16725081)
chr5 (283-333)||(9475094-9475144)
chr5 (285-331)||(28601943-28601989)
chr5 (286-324)||(41328615-41328653)
chr5 (304-333)||(8911762-8911791)
[»] chr8 (5 HSPs)
chr8 (284-329)||(38125599-38125644)
chr8 (286-329)||(6438224-6438267)
chr8 (282-333)||(13481319-13481370)
chr8 (283-329)||(15196514-15196560)
chr8 (283-329)||(24802569-24802615)
[»] scaffold0064 (1 HSPs)
scaffold0064 (283-329)||(59414-59460)
[»] chr4 (3 HSPs)
chr4 (283-329)||(32564843-32564889)
chr4 (282-331)||(44302388-44302437)
chr4 (283-329)||(4473072-4473118)
[»] chr1 (6 HSPs)
chr1 (283-333)||(6951051-6951101)
chr1 (283-329)||(7255148-7255194)
chr1 (283-329)||(11248658-11248704)
chr1 (287-329)||(43325687-43325729)
chr1 (288-333)||(25089319-25089364)
chr1 (284-329)||(46836392-46836437)
[»] scaffold0013 (1 HSPs)
scaffold0013 (282-329)||(61588-61635)
[»] scaffold0009 (1 HSPs)
scaffold0009 (283-329)||(143366-143412)
[»] chr6 (1 HSPs)
chr6 (283-333)||(1520914-1520964)
[»] chr3 (2 HSPs)
chr3 (283-329)||(33896668-33896714)
chr3 (284-329)||(25124710-25124755)
[»] scaffold0001 (1 HSPs)
scaffold0001 (284-329)||(504606-504651)


Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 6 - 282
Target Start/End: Original strand, 28885196 - 28885472
Alignment:
Q  6 gagtagcagagatgattgttaaaatttcaaacgattttcaagtatcagttcacgatagatcatgacacacttccctaagctgtctataatagatggcaaa 105  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28885196 gagtagcacagatgattgttaaaatttcaaacgattttcaagtatcagttcatgatagatcatgacacacttccctaagctgtctataatagatggcaaa 28885295  T
Q  106 ataataataagttttatgatatcacaaaaagtaaagaacatgacaagccagcttttttgttatccttagttttatacgagtgaatcttttgaaatcttat 205  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||     
T  28885296 ataataataagttttatgatatcacaaaaagaaaagaacatgacaagccaacttgtttgtgatccttagttttatacgagtgaatcttttgaaatcttaa 28885395  T
Q  206 gtattttaaattctgttgtaggtgaacaatgcaggagttagtggtgtcaatccatatgaaacggttagtgttcttat 282  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28885396 gtattttaaattttgttgtaggtgaacaatgcaggagttagtggtgtcaatccatatgaaacggttagtgttcttat 28885472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 129 - 282
Target Start/End: Original strand, 28880607 - 28880760
Alignment:
Q  129 acaaaaagtaaagaacatgacaagccagcttttttgttatcctt-agttttatacgagtgaatcttttgaaatcttatgtattttaaattctgttgtagg 227  Q
    ||||||||||||  ||||| || |||| ||| ||| |||||||| ||||||||| |||||||||||||||| | | | ||||| ||||||||||||||||    
T  28880607 acaaaaagtaaaagacatggcatgccatcttctttattatcctttagttttatatgagtgaatcttttgaa-tatgaggtattctaaattctgttgtagg 28880705  T
Q  228 tgaacaatgcaggagttagtggtgtcaatccatatgaaacggttagtgttcttat 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28880706 tgaacaatgcaggagttagtggtgtcaatccatatgaaacggttagtgttcttat 28880760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 28885496 - 28885546
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatataagga 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28885496 ctatatgtaagcaccattttcctctaataaaagggtgcttacatataagga 28885546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 5516316 - 5516362
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  5516316 ctatatgtaagcaccatttacctttaataaaatggtgcttacatata 5516362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 19989093 - 19989139
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    ||||||||||||||||||| |||||||||||| |||||||| |||||    
T  19989093 ctatatgtaagcaccatttgcctctaataaaatggtgcttagatata 19989139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 28880489 - 28880590
Alignment:
Q  31 ttcaaacgattttcaagtatcagttcacgatagatcatgacacacttccctaagctgtctata--atagatggcaaaataataataagttttatgatatc 128  Q
    ||||| |||||| ||||||||| | |||  |||||||||| | |||| |||||| || |||||  |||||||||||||||  |  |||||||||||||||    
T  28880489 ttcaatcgatttacaagtatcaatccaccgtagatcatgagatactttcctaagttgcctatataatagatggcaaaatagcaccaagttttatgatatc 28880588  T
Q  129 ac 130  Q
    ||    
T  28880589 ac 28880590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 31448378 - 31448424
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    ||||||||||||||| ||| | ||||||||||||||||||| |||||    
T  31448378 ctatatgtaagcaccctttgcatctaataaaagggtgcttagatata 31448424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 33810678 - 33810632
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  33810678 ctatatgtaagcacaattttcctctaataaaagggtgcttacatata 33810632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 19246494 - 19246546
Alignment:
Q  282 tctatatgtaagcaccattttcctctaataaaagg-gtgcttacatataagga 333  Q
    |||||||||||||| |||||||||||||||||||| ||||||| |||||||||    
T  19246494 tctatatgtaagcatcattttcctctaataaaaggtgtgcttagatataagga 19246546  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 9154149 - 9154195
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    |||||||||| |||| ||||||||||||||||||||||||| |||||    
T  9154149 ctatatgtaaccacccttttcctctaataaaagggtgcttagatata 9154195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 12457079 - 12457033
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    ||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  12457079 ctatatgtaagcaccctttgcctctaataaaagggtgcttagatata 12457033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 329
Target Start/End: Complemental strand, 12890322 - 12890280
Alignment:
Q  287 atgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    |||||||||||||||||||||||||||||| |||||| |||||    
T  12890322 atgtaagcaccattttcctctaataaaaggatgcttagatata 12890280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 43939451 - 43939497
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    |||||||||||||| |||| ||||||||||||||||||||| |||||    
T  43939451 ctatatgtaagcactatttgcctctaataaaagggtgcttagatata 43939497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 14949296 - 14949255
Alignment:
Q  282 tctatatgtaagcaccattttcctctaataaaagggtgctta 323  Q
    |||||||||||||||||||| ||||||||||||| |||||||    
T  14949296 tctatatgtaagcaccatttgcctctaataaaagagtgctta 14949255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 38985187 - 38985141
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    |||||| |||||||||||| ||||||||||||| ||||||| |||||    
T  38985187 ctatatataagcaccatttccctctaataaaagagtgcttatatata 38985141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 21924850 - 21924895
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatat 328  Q
    |||||| |||||||| ||| ||||||||||||||||||||| ||||    
T  21924850 ctatatataagcaccttttacctctaataaaagggtgcttaaatat 21924895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 39028775 - 39028815
Alignment:
Q  282 tctatatgtaagcaccattttcctctaataaaagggtgctt 322  Q
    |||||||||||||||||||| | ||||| ||||||||||||    
T  39028775 tctatatgtaagcaccatttgcatctaacaaaagggtgctt 39028815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 330
Target Start/End: Complemental strand, 16725081 - 16725035
Alignment:
Q  284 tatatgtaagcaccattttcctctaataaaagggtgcttacatataa 330  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||    
T  16725081 tatatgtaagcatcatttgcctctaataaaagggtgcttacatataa 16725035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 9475144 - 9475094
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatataagga 333  Q
    ||||||||||||||| ||| |||| ||||||| |||||||| |||||||||    
T  9475144 ctatatgtaagcaccttttgcctcgaataaaatggtgcttatatataagga 9475094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 28601989 - 28601943
Alignment:
Q  285 atatgtaagcaccattttcctctaataaaagggtgcttacatataag 331  Q
    |||| ||||||||||||  |||||||||||||||||||| |||||||    
T  28601989 atatataagcaccatttatctctaataaaagggtgcttagatataag 28601943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 41328653 - 41328615
Alignment:
Q  286 tatgtaagcaccattttcctctaataaaagggtgcttac 324  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  41328653 tatgtaagcaccctttccctctaataaaagggtgcttac 41328615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 333
Target Start/End: Complemental strand, 8911791 - 8911762
Alignment:
Q  304 ctctaataaaagggtgcttacatataagga 333  Q
    ||||||||||||||||||||||||||||||    
T  8911791 ctctaataaaagggtgcttacatataagga 8911762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 329
Target Start/End: Original strand, 38125599 - 38125644
Alignment:
Q  284 tatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||    
T  38125599 tatatgtaagcaccttttgcctctaataaaagggtgcttacatata 38125644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 329
Target Start/End: Complemental strand, 6438267 - 6438224
Alignment:
Q  286 tatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    ||||||||||||||||  ||||||||||||||||||||||||||    
T  6438267 tatgtaagcaccatttatctctaataaaagggtgcttacatata 6438224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 13481319 - 13481370
Alignment:
Q  282 tctatatgtaagcaccattttcctctaataaaagggtgcttacatataagga 333  Q
    |||||||||||||||||||| |||||||||||| || | ||| |||||||||    
T  13481319 tctatatgtaagcaccatttacctctaataaaatggagtttaaatataagga 13481370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 15196514 - 15196560
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    ||||||||||||| | ||||| ||||||||||||||||||| |||||    
T  15196514 ctatatgtaagcatctttttcttctaataaaagggtgcttagatata 15196560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 24802569 - 24802615
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    ||||||||||||||| ||| | ||||||||||||||||||| |||||    
T  24802569 ctatatgtaagcaccttttgcatctaataaaagggtgcttagatata 24802615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 59414 - 59460
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    |||||| ||||||| |||| |||||||||||||||||||||||||||    
T  59414 ctatatataagcacaatttccctctaataaaagggtgcttacatata 59460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 32564843 - 32564889
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    ||||||||||||||  ||| |||||||||||||||||||||||||||    
T  32564843 ctatatgtaagcactctttgcctctaataaaagggtgcttacatata 32564889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 44302388 - 44302437
Alignment:
Q  282 tctatatgtaagcaccattttcctctaataaaagggtgcttacatataag 331  Q
    ||||||| |||||| | ||||||||||||||||||||||||| |||||||    
T  44302388 tctatatctaagcatctttttcctctaataaaagggtgcttaaatataag 44302437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 4473072 - 4473118
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    ||||||||||||||  ||| |||||||||||| ||||||||||||||    
T  4473072 ctatatgtaagcactctttgcctctaataaaaaggtgcttacatata 4473118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 6951051 - 6951101
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatataagga 333  Q
    ||||||||||||||  ||| ||||||||||||||||||||| |||||||||    
T  6951051 ctatatgtaagcacactttgcctctaataaaagggtgcttagatataagga 6951101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 7255148 - 7255194
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    ||||||||||||||  ||| |||||||||||||||||||||||||||    
T  7255148 ctatatgtaagcacattttccctctaataaaagggtgcttacatata 7255194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 11248704 - 11248658
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    ||||||||||||||||||| ||||||||||||  ||||||| |||||    
T  11248704 ctatatgtaagcaccatttgcctctaataaaatagtgcttagatata 11248658  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 43325687 - 43325729
Alignment:
Q  287 atgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    ||||||||| |||||| |||||||||||| |||||||||||||    
T  43325687 atgtaagcatcatttttctctaataaaagagtgcttacatata 43325729  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 25089319 - 25089364
Alignment:
Q  288 tgtaagcaccattttcctctaataaaagggtgcttacatataagga 333  Q
    |||||||||||||| ||| ||||||||||||| ||| |||||||||    
T  25089319 tgtaagcaccatttgcctttaataaaagggtgtttagatataagga 25089364  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 329
Target Start/End: Original strand, 46836392 - 46836437
Alignment:
Q  284 tatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    |||||||||||||  ||| ||||||||||||||||||||| |||||    
T  46836392 tatatgtaagcacattttgcctctaataaaagggtgcttagatata 46836437  T

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Target: scaffold0013 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 61635 - 61588
Alignment:
Q  282 tctatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    ||||||| |||| |||||||||||||||||||||||| |||| |||||    
T  61635 tctatatataagtaccattttcctctaataaaagggtacttaaatata 61588  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 143412 - 143366
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    ||||||||||||| | ||| ||||||||||||||||| |||||||||    
T  143412 ctatatgtaagcatcctttgcctctaataaaagggtgtttacatata 143366  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 1520914 - 1520964
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatataagga 333  Q
    |||||| |||||||  ||| ||||||||||||||||||||| |||||||||    
T  1520914 ctatatttaagcacactttgcctctaataaaagggtgcttagatataagga 1520964  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 33896714 - 33896668
Alignment:
Q  283 ctatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    |||||||||| |||||||| |||||||| |||||||||||| |||||    
T  33896714 ctatatgtaaacaccatttgcctctaatgaaagggtgcttatatata 33896668  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 329
Target Start/End: Complemental strand, 25124755 - 25124710
Alignment:
Q  284 tatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    ||||| |||||| ||||| ||||||||||||||||||||| |||||    
T  25124755 tatatataagcatcatttacctctaataaaagggtgcttatatata 25124710  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 329
Target Start/End: Original strand, 504606 - 504651
Alignment:
Q  284 tatatgtaagcaccattttcctctaataaaagggtgcttacatata 329  Q
    |||||||||||||| |||  ||||||||||| ||||||||||||||    
T  504606 tatatgtaagcaccttttgtctctaataaaaaggtgcttacatata 504651  T

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