View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8820_low_16 (Length: 312)
Name: NF8820_low_16
Description: NF8820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8820_low_16 |
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| [»] scaffold0444 (1 HSPs) |
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Alignment Details
Target: scaffold0444 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: scaffold0444
Description:
Target: scaffold0444; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 4857 - 5151
Alignment:
| Q |
1 |
ttcaagaaagaacaaaattgtgcaatatcataactacataaaaatctgcaaagttatgtaggagaatacaaagtggcccaacaaaacagacatgtattaa |
100 |
Q |
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| T |
4857 |
ttcaagaaagaacaaaattgtgcaatatcataactacataaaaatctgccaagttatgtaggagaatacaaagtggcccaacaaaacagacatgtatgaa |
4956 |
T |
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| Q |
101 |
ttgttaccttctgctttttaatgacaagatcaagtgtttgttttagttgcttacttttgtgctttcttgctttatccaaggcgccatcagcctctgccac |
200 |
Q |
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| T |
4957 |
ttgttaccttctgctttttaatgacaagatcaagtgtttgttttagttgcttacttttgtgctttcttgctttatccaaggcgccatcagcctctgccac |
5056 |
T |
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| Q |
201 |
aacaaacaatgcgcagtggttttcaataggcaaaagtatataaaatgtcatctcaattgtaagctataattaaattataactatactacttaatg |
295 |
Q |
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| T |
5057 |
aacaaacaatgcgcagtggttttcaataggcaaaagtatataaaatgtcatctcaattgtaagctataattaaattataactatactacttaatg |
5151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 44440044 - 44440338
Alignment:
| Q |
1 |
ttcaagaaagaacaaaattgtgcaatatcataactacataaaaatctgcaaagttatgtaggagaatacaaagtggcccaacaaaacagacatgtattaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44440044 |
ttcaagaaagaacaaaattgtgcaatatcataactacataaaaatctgccaagttatgtaggagaatacaaagtggcccaacaaaacagacatgtatgaa |
44440143 |
T |
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| Q |
101 |
ttgttaccttctgctttttaatgacaagatcaagtgtttgttttagttgcttacttttgtgctttcttgctttatccaaggcgccatcagcctctgccac |
200 |
Q |
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| T |
44440144 |
ttgttaccttctgctttttaatgacaagatcaagtgtttgttttagttgcttacttttgtgctttcttgctttatccaaggcgccatcagcctctgccac |
44440243 |
T |
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| Q |
201 |
aacaaacaatgcgcagtggttttcaataggcaaaagtatataaaatgtcatctcaattgtaagctataattaaattataactatactacttaatg |
295 |
Q |
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| T |
44440244 |
aacaaacaatgcgcagtggttttcaataggcaaaagtatataaaatgtcatctcaattgtaagctataattaaattataactatactacttaatg |
44440338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 44429828 - 44430113
Alignment:
| Q |
1 |
ttcaagaaagaacaaaattgtgcaatatcataactacataaaaatctgcaaagttatgtaggagaatacaaagtggcccaacaaaacagacatgtattaa |
100 |
Q |
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|||||||||||||| ||||||| | ||||||||| |||||||||| ||||| |||||| ||||| |||||||||||||||||||| ||||||| | |
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| T |
44429828 |
ttcaagaaagaacacaattgtgta----cataactacgtaaaaatctgaaaagtaatgtagaggaataaaaagtggcccaacaaaacaggcatgtatgag |
44429923 |
T |
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| Q |
101 |
ttgttaccttctgctttttaatgacaagatcaagtgtttgttttagttgcttacttttgtgctttcttgctttatccaaggcgccatcagcctctgccac |
200 |
Q |
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|||||||||||||||| ||||||||| ||| |||||| | || ||||||| | ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44429924 |
ttgttaccttctgcttcttaatgacacgattaagtgtatcttctagttgcctctttttgtgctttcttgctttatccaaggcgccatcagcctctgcaac |
44430023 |
T |
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| Q |
201 |
aacaaacaatgcgcagtggttttcaataggcaaaagtatataaaatgtcatctcaattgtaagctataattaaattataactatactact |
290 |
Q |
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| T |
44430024 |
aacaaacagtgtgcagtggttttcaataggcaaaagtatataaaatgtcatctcaattgtaagttataattaaattataattatactact |
44430113 |
T |
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