View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8820_low_7 (Length: 450)
Name: NF8820_low_7
Description: NF8820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8820_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 28886144 - 28885704
Alignment:
| Q |
1 |
tcaacttaacctataaaattgttaatatttcaaaatagtccttgaacattgaagtctttgatcatattgatcgttttggaatttagttcttgaaattttc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28886144 |
tcaatttaacctataaaattgttaatatttcaaaatagtccttgaacattgaagtctttgatcatattgatcgttttggaatttagttcttgaaattttc |
28886045 |
T |
|
| Q |
101 |
tactagaggcaagtgcatgtttggattggcagaatcatgacgagccattacaattttgacaaaagttacattttagaattttaacaaactcaccgttgca |
200 |
Q |
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| T |
28886044 |
tactagaggcaagtgcatgtttggattggcagaatcatgacgagccattacaattttgacaaaagttacattt-agaattttaacaaacttaccgttgca |
28885946 |
T |
|
| Q |
201 |
attaacaaactcgccaacaatccaaacatgcacaaataaaatcatgttgacattgtgttaatttaataaactaatttgacaaagctagcaatttcagaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28885945 |
attaacaaactcgccaacaatccaaacatgcacaaataaaatcatgttgacattgtgttaatttaataaactaatttgacaaagctagcaatttcataaa |
28885846 |
T |
|
| Q |
301 |
ccaaattggtgaatcattcaaaagatctggtactcttgattgtaccttcaataatgctgcttgggaggaaacattaacaatcttgggtgaattggataac |
400 |
Q |
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| T |
28885845 |
ccaaattggtgaatcattcaaaagatctggtactcttgattgtaccttcaataatgctgcttgggaggaaacattaacaatcttggaagaattggataac |
28885746 |
T |
|
| Q |
401 |
ttaagaaggggaagaaaggcctcggttgtttccttaacacca |
442 |
Q |
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| T |
28885745 |
ttgagaaggggaagaaaggcatcagttgtttccttaacacca |
28885704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 442
Target Start/End: Complemental strand, 28881353 - 28880918
Alignment:
| Q |
13 |
ataaaattgttaatatttcaaaatagtccttgaacattgaagtctttgatcatattgatcgttttggaatttagttcttgaaattttctactagaggc-a |
111 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| ||||| | |
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| T |
28881353 |
ataaaattgttaatatttcaaaatagttcttgaactttgaagtctttgatcatgttggtcgttttggaatttagtccttgaaattttctacgagaggtta |
28881254 |
T |
|
| Q |
112 |
agtgcatgtttggattggcagaatcatgacgagccattacaattttgacaaaagttacattttagaattttaacaaactcaccgt-----tgcaattaac |
206 |
Q |
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| T |
28881253 |
agtgcatgtttggattggcagaatcatgatgagccattacaattttgataaaagttacacttttgagtttcaacaaactcaccgtgccgttgcgattaac |
28881154 |
T |
|
| Q |
207 |
aaactcgccaacaatccaaacatgcacaaataaaatcatgttgacattgtgttaatttaataaactaatttgacaaagc-tagcaatttcagaaaccaaa |
305 |
Q |
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||||||||||||||||||||||| ||| | |||| | || || | ||||||||||||||| | |||||||||||||||| |||||||||||||||| ||| |
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| T |
28881153 |
aaactcgccaacaatccaaacatacactattaaagttatattaatattgtgttaatttaagagactaatttgacaaagcatagcaatttcagaaactaaa |
28881054 |
T |
|
| Q |
306 |
ttggtgaatcattcaaaagatctggtactcttgattgtaccttcaataatgctgcttgggaggaaacattaacaatcttgggtgaattggataacttaag |
405 |
Q |
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||||||||||||||||| | | ||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| || |
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| T |
28881053 |
ttggtgaatcattcaaa-gttttggtactcttgtttggacctgcaataatgctgcttgggaggaaacattaataatcttgggagaattggataacttgag |
28880955 |
T |
|
| Q |
406 |
aaggggaagaaaggcctcggttgtttccttaacacca |
442 |
Q |
| |
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||||| |||||||||||| |||||||||||||||||| |
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|
| T |
28880954 |
aagggaaagaaaggcctcagttgtttccttaacacca |
28880918 |
T |
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