View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8820_low_8 (Length: 436)
Name: NF8820_low_8
Description: NF8820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8820_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 31 - 421
Target Start/End: Complemental strand, 6642883 - 6642493
Alignment:
| Q |
31 |
gattattctcttatgccggaagcttcttgtgtgtctggttttaagttagggaaaaagctaaaagtgatttcatataaaattgattattcttttatgttgg |
130 |
Q |
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| T |
6642883 |
gattattctcttatgccggaagcttcttgtgtgtctggttttaagttagggaaaaagctaaaagtgatttcatataaaattgattattctcttatgttgg |
6642784 |
T |
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| Q |
131 |
atgcttcacgtgtatttcgtttgattatcatattttggtgatttcgattgaaatcaattttggttttagtttgattctcttatgttgactcaaaacgtga |
230 |
Q |
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| T |
6642783 |
acgcttcacgtgtatttcgtttgattatcatattttggtgatttcgattgaaatcgattttggttttagtttgattcttttatgttgactcaaaacgtga |
6642684 |
T |
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| Q |
231 |
attttaaacttaactttgtttgttgctctnnnnnnnnctcaannnnnnngttcaattcatttttacaagaatatatctagacataaactatttcatgatg |
330 |
Q |
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| T |
6642683 |
attttaaacttaactttgtttgttgttctaaaaaaaactcaatttttttgttcaattcatttttacaagaatatatctagacataaactatttcatgatg |
6642584 |
T |
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| Q |
331 |
aattaacttttaattaacatcacttttacggaacaaattcattcaaaaacaattttcattacatacttcctaccattttaatagtgaaaaa |
421 |
Q |
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| T |
6642583 |
aattaacttttaattaacatcacttttacggaacaaattcattcaaaaacaattttcattacatacttcctaccattttaatagtgaaaaa |
6642493 |
T |
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