View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8820_low_9 (Length: 404)
Name: NF8820_low_9
Description: NF8820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8820_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 9e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 240 - 399
Target Start/End: Complemental strand, 46870430 - 46870271
Alignment:
| Q |
240 |
atcatttgatcttcttcttagcatctgtctcataccttctgctactctaactgcagggttagatttgaattttctgcaaaatgacatgtgagctttcaca |
339 |
Q |
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| T |
46870430 |
atcatttgatcttcttcttagcatctgtctcataccttctgctactctaactgcagggttagatttgaattttctgcaaaatgacatgtgagctttcaca |
46870331 |
T |
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| Q |
340 |
gcttcatccatatcccattgctttttacctccactcattacttcatctctctctgcttct |
399 |
Q |
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| T |
46870330 |
gcttcatccatatcccattgctttttacctccactcattacttcatctctcactgcttct |
46870271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 62 - 206
Target Start/End: Complemental strand, 46870608 - 46870464
Alignment:
| Q |
62 |
caattaactttttattctaaccaaaacagagtatcctctgcctcaaacagagtatactctgcttcttggtttctcatcatcaatacaaagaaaaagtgga |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46870608 |
caattaactttttattctaaccaaaacagagtatcctctgcctcaaacagagtatactctgcttcttggtttctcatcatcaatacaaagaaaaagtgga |
46870509 |
T |
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| Q |
162 |
agaatctccaacttgagaagtggttggtgaccttgaatacttctt |
206 |
Q |
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| T |
46870508 |
agaatctccaacttgagaagtggttggtgaccttgaatacttctt |
46870464 |
T |
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