View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8821_high_12 (Length: 239)
Name: NF8821_high_12
Description: NF8821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8821_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4663806 - 4663585
Alignment:
| Q |
1 |
ctaaacttcaatatcgagattttctatttctctttgattaaaacacaacctcaaatgaggtcgcatcaaccacatttgattgtgattcttagcaatatcg |
100 |
Q |
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| T |
4663806 |
ctaaacttcaatatcgagattttctatttctctttgattaaaacacaacctcaaatgaggtcgcatcaaccacatttgattgtgattcttagcaatatcg |
4663707 |
T |
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| Q |
101 |
tttagccacgtatatagaactacatacctatgaaatcaatcactagtcgtccatctgaacaacgaccagttgcgtttctaaagaaggtttcaccataagg |
200 |
Q |
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| T |
4663706 |
tttagtcacgtatatagaactacatacctatgaaatcaatcactagtcgtccatctgagcaacgaccagttgcatttctaaagaaggtttcaccataagg |
4663607 |
T |
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| Q |
201 |
aggatgccctacggctgggaat |
222 |
Q |
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|||||| ||||||||||||||| |
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| T |
4663606 |
aggatgacctacggctgggaat |
4663585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 4667226 - 4667025
Alignment:
| Q |
11 |
atatcgagattttctatttctctttgattaaaacacaacctcaaatgaggtcgcatcaaccacatttgattgtgattcttagcaatatcgtttagccacg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||| |||| |
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| T |
4667226 |
atatcgagattttctatttctctttgattaaaacacaacctcaaatgaggccgcatcaatcacatttgattttgattcttagcaatatcatttagtcacg |
4667127 |
T |
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| Q |
111 |
tat---------atagaactacatacctatgaaatcaatcactagtcgtccatctgaacaacgaccagttgcgtttctaaagaaggtttcaccataagga |
201 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||| |
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| T |
4667126 |
tatatatacatcatagaactacatacctatgaaatcaatcactagtcgtccatctgagcaacgaccagttgcatgtctaaagaaggtttcaccataagga |
4667027 |
T |
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| Q |
202 |
gg |
203 |
Q |
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|| |
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| T |
4667026 |
gg |
4667025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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