View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8821_high_2 (Length: 454)
Name: NF8821_high_2
Description: NF8821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8821_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 4725772 - 4725337
Alignment:
| Q |
1 |
atatcataaggtgggaactgggaaatatgaaatgttgcnnnnnnnnntctcatcaaataatgttgcaacttaaatttagttccatgtcnnnnnnnnnn-- |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4725772 |
atatcataaggtgggaactgggaaatatgaaatgttgcaaaaaaaa-tctcatcaaataatgttgcaacttaaatttagttccatgtcaaaaaaaaaaaa |
4725674 |
T |
|
| Q |
99 |
cttaaatttagtgtatatatatgtacctcaataaaatagttaagataaattggtgtttggagaagctgtgactgattaattagtgttaatgcatgcaaag |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4725673 |
cttaaatttagtgtatatatatgtacctcaataaaatagttaagataaattggtgtatggagaagttgtgactgattaattagtgttaatgcatgcaaag |
4725574 |
T |
|
| Q |
199 |
tatatattaccatgctattggtaattttttgtgatatagaaaattaatatgggtatactgcaatagttacagcataaagtaaaatcagtgccaaaaatta |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4725573 |
tatatattaccatgctattggtaattttttgtgatatagaaaattaatatgggtatactgcaatagttacaacataaagtaaaatcagtgccaaaaatta |
4725474 |
T |
|
| Q |
299 |
gagatgaaaaaacctaaactcatcattattttcttcatcacaaaatttagtgaagaaaagtattttcttcatcacaaaacttagtgnnnnnnngtatttt |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
4725473 |
gagatgaaaaaacctaaactcatcattattttcttcatcacaaaatttagttaagaaaagtattttcttcatcacaaagtttagtgaaaaaaagtatttt |
4725374 |
T |
|
| Q |
399 |
cttcgtcattaattagacacggatgacacatttttcg |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4725373 |
cttcgtcattaattagacacggatgacacatttttcg |
4725337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University