View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8821_high_4 (Length: 382)
Name: NF8821_high_4
Description: NF8821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8821_high_4 |
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| [»] scaffold0002 (3 HSPs) |
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| [»] scaffold0263 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 401920 - 401552
Alignment:
| Q |
1 |
aggagaagtagccttataaaagggcatgcataaattagagttactcattccaatctatctaaaccccaacatatagaaaacacaaaaaacaaagtatata |
100 |
Q |
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| T |
401920 |
aggagaagtagccttataaaagggaatgcataaattagagttactcattccaatctatctaaaccccaacataaagaaaacacaaaaaacaaagtatata |
401821 |
T |
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| Q |
101 |
ttaatttctcatatatcgatcctccaaaatgtcaacagctcctatcatcggtgacaatgatgtgaatccagtcatttttagagaatacattggcgtcaag |
200 |
Q |
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| T |
401820 |
ttaatttctcatatatcgatcctccaaaatgtcaacagctcctatcatcggtgacaatgatgtgaatccagtcatttttagagaatacattggcgtgaag |
401721 |
T |
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| Q |
201 |
tcctacccagattctttaaataatttcccagctgatattatcggccgccacatccctgaattccatttcattttgggctttgcccatgagacttacgtcg |
300 |
Q |
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| T |
401720 |
tcctacccagattctttaaataatttcccagctgatattatcggccgccacatccctgaattccatttcattttgggctttgcccatgagacttacgtcg |
401621 |
T |
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| Q |
301 |
atggaaaaggcaccggaattttcaacgccagttggaagattcctttcttcagtccagacaatgttgatg |
369 |
Q |
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| T |
401620 |
atggaaaaggcaccggaattttcaacgccagttggaagattcctttctttggtccagacaatgttgatg |
401552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 405438 - 405323
Alignment:
| Q |
32 |
aaattagagttactcattccaatctatctaaaccccaacatatagaaaacacaa-aaaacaaagtatatattaatttctcatatatcgatcctccaaaat |
130 |
Q |
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| T |
405438 |
aaattagagttactcattccaatctatctaaaccccaacatatggaaaacacaaaaaaagaaattatatattaatttctcatatatcgatcctccgaaat |
405339 |
T |
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| Q |
131 |
gtcaacagctcctatc |
146 |
Q |
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| T |
405338 |
gtcaacagctcctatc |
405323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 93611 - 93525
Alignment:
| Q |
144 |
atcatcggtgacaatgatgtgaatccagtcatttttagagaatacattggcgtcaagtcctacccagattctttaaataatttccca |
230 |
Q |
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| T |
93611 |
atcatcggtgacaatgctgttgatccattcatttttcgagaatacattggcgtgaagccatacccagcttctcttaataatttccca |
93525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 15441 - 15355
Alignment:
| Q |
144 |
atcatcggtgacaatgatgtgaatccagtcatttttagagaatacattggcgtcaagtcctacccagattctttaaataatttccca |
230 |
Q |
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|||||||||||||||| ||| ||||| |||||||| |||||||||||||||| ||| | ||||||| |||| | |||||||||||| |
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| T |
15441 |
atcatcggtgacaatgctgttgatccattcatttttcgagaatacattggcgtgaagccatacccagcttctcttaataatttccca |
15355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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