View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8821_high_5 (Length: 362)
Name: NF8821_high_5
Description: NF8821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8821_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 4664003 - 4664351
Alignment:
| Q |
1 |
aattcttcaacaaagaaatgggaaaattgctatggacaaatcattcattgaacattcagcttggctggtttaagaagctgaaaccttccttttgtacaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
4664003 |
aattcttcaacaaagaaatgggaaaattgctatggacaaatcattcattgaacattcagcttggctggttcaagaagctgaagccttccttttgtacaac |
4664102 |
T |
|
| Q |
101 |
taaacaaggtaacatataacattcattgaccatcccaaatgaaactattgtatgaaattttccaataacaa--cnnnnnnnaatcctctgctatgtcaca |
198 |
Q |
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| T |
4664103 |
taaacaaggtaacatataacattcattgaccatcccaaatgaaaccattgtatgaaattttccaataacaaaactttttttaatcctctgctatgtcaca |
4664202 |
T |
|
| Q |
199 |
gattgtgatagctacttcaaaaggtcactcttcgtggtgggagagataggtggtaatgattataactatgctgcctttgctggagatattattcatcttc |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4664203 |
gattgtgatagctacttcaaaaggtcactcttcgtggtgggagagataggtggtaatgattataactatgctgcctttgctggagatattactcatcttc |
4664302 |
T |
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| Q |
299 |
gagacaccgttcctttagttgttcaaacaatagcaaaggccattgatgt |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4664303 |
gagacaccgttcctttagttgttcaaacaatagcaaaggccattgatgt |
4664351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 4667446 - 4667788
Alignment:
| Q |
1 |
aattcttcaacaaagaaatgggaaaattgctatggacaaatcattcattgaacattcagcttggctggtttaagaagctgaaaccttccttttgtacaac |
100 |
Q |
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||||||||||| ||| | || |||||||||||||| |||||||||||||||||||| | ||||||||||| |||||||||||||||||||| || ||||| |
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| T |
4667446 |
aattcttcaacgaaggagtgagaaaattgctatgggcaaatcattcattgaacatttaacttggctggttcaagaagctgaaaccttccttgtgcacaac |
4667545 |
T |
|
| Q |
101 |
taaacaaggtaacatataacattcattgaccatcccaaatgaaactattgtatgaaattttccaataacaacnnnnnnn---aatcctctgctatgtcac |
197 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
4667546 |
taaacaaggtaacattgag---tcattgaccatcccaaatgaaactattgtatgaaattt-ccaataacaaaacttgtttttaatcctctgctatgtcac |
4667641 |
T |
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| Q |
198 |
agattgtgatagctacttcaaaaggtcactcttcgtggtgggagagataggtggtaatgattataactatgctgcctttgctggagatattattcatctt |
297 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4667642 |
agattgtgatagctacttcaaaaggccactctttgtggtgggagagataggtggtaatgattataactatgctgcctttgctggagatattactcatctt |
4667741 |
T |
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| Q |
298 |
cgagacaccgttcctttagttgttcaaacaatagcaaaggccattga |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4667742 |
cgagacaccgttcctttagttgttcaaacaatagcaaaggtcattga |
4667788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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