View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8821_high_6 (Length: 332)
Name: NF8821_high_6
Description: NF8821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8821_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 13356880 - 13356559
Alignment:
| Q |
1 |
taagagattcatgtattattatgcagctaattaatttgtacaatgtttcttgaacagggtgtttgaaaaaattgagctcctaccatcaccttatgatgat |
100 |
Q |
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| T |
13356880 |
taagagattcatgtat-attatgcagctaattaatttgtacaatgtttcttgaacagggtgtttgaaaaaattgagctcctaccatcaccttatgatgag |
13356782 |
T |
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| Q |
101 |
gaggatgaaatcttgttcatccctcgttggacaaatactagcttagaagattgttcaacttctatccccggtctaaatttgcctgatgaggaaagtttaa |
200 |
Q |
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| T |
13356781 |
gaggatgaaatcttgttcatccctcgttggacagatactagcttggaagattgttcaacttctatccccggtctaaatttgcctgatgaggaaagtttaa |
13356682 |
T |
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| Q |
201 |
ttgtgtatgatgcacctgaaagcaatatagatattgaagatgatttggatagttcagactcaacttatgatatgattaagaagaatgtagtggaatatgt |
300 |
Q |
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| T |
13356681 |
ttgtgtatgatgcacctgaaagcaatatagatattgaagatgatttggatagttcagactcaacttatgatatgattaagaagaatgtagtggaatatgt |
13356582 |
T |
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| Q |
301 |
actaaacaacgatgatgatgatg |
323 |
Q |
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|||||||||||||||| |||||| |
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| T |
13356581 |
actaaacaacgatgataatgatg |
13356559 |
T |
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