View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8821_high_8 (Length: 310)

Name: NF8821_high_8
Description: NF8821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8821_high_8
NF8821_high_8
[»] chr1 (1 HSPs)
chr1 (18-310)||(40451873-40452165)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 40452165 - 40451873
Alignment:
Q  18 gcacaaactgtgagtggcccaatcttctcccttgtttgtgaattattttcttttctgaattatttatgtctctctctttgatcttacatatatttcaaac 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40452165 gcacaaactgtgagtggtccaatcttctcccttgtttgtgaattattttcttttctgaatgatttatgtctctctctttgatcttacatatatttcaaac 40452066  T
Q  118 aatgtttcatgttcaggttgtcgttcagaaaaatagtcctagaggagttcattttcgccgtgctggacctcgagaaaaggtataaaacatggaaaattca 217  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40452065 aatgtttcatgttcagattgtcgttcagaaaaatagtcctagaggagttcattttcgccgtgctggacctcgagaaaaggtataaaacatggaaaattca 40451966  T
Q  218 gtgttcatttgcaatgtttagaagctgacgataatgccttctaatcttaggtttacttcaaggcagaagaagtacgtgcttgcatagtgactt 310  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40451965 gtgttcatttgtaatgtttagaagctgacgataatgccttctaatattaggtttacttcaaggcagaagaagtacgtgcttgcatagtgactt 40451873  T

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