View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8821_low_1 (Length: 461)
Name: NF8821_low_1
Description: NF8821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8821_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 441
Target Start/End: Complemental strand, 27476083 - 27475657
Alignment:
| Q |
16 |
ggacaacgcttgagtagctacttgtacctcctcgatgcatcgtagagatattcttcgtctgcttattggaaactaacaatcttcttcctttttacaaggt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||| |
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| T |
27476083 |
ggacaacgcttgagtagctacttgtacctcctcgatgcatcgtagagatattctccgtcttcttgttggaaactaacaatctccttcctttttacaaggt |
27475984 |
T |
|
| Q |
116 |
atttggctgttgggaaaaagcgggggaggaattcttgcttcagatcatcccaagtagctatggtggcacttgttcaaatatcaatatgacgacatcaagc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27475983 |
atttggctgttgggaaaaagcgggggaggaattcttgcttcagatcatcccaagtagctatggtggcacttgttcaaatatcaatatgacgacatcaagc |
27475884 |
T |
|
| Q |
216 |
agaattagtgttaaagcaagcaaattactaagcttcgtgaatattgagaagctgctagcctcccatgcataatggaaacacttaaatgtgttagattagt |
315 |
Q |
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| T |
27475883 |
agaattagtgttaaagcaagcaaattactaagcttcgtgaatattgagaagctgctagcctcccatgcataatggaaacacttaaatgtgttagattagt |
27475784 |
T |
|
| Q |
316 |
ggc-nnnnnnnaatggcaaaatatatacatagataaataaagaaatataaaagtacagaacatacaaaacagtcggcaagcgacacaccaacaaaacacc |
414 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27475783 |
ggctttttttgaatggcaaaatatatacatagataaataaagaaatataaaagtacagaatatacaaaacagtcggcaagcgacacaccaacaaaacacc |
27475684 |
T |
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| Q |
415 |
ccaaaggaggaacacccccaaaacccc |
441 |
Q |
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| T |
27475683 |
ctaaaggaggaacacccccaaaacccc |
27475657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 17555177 - 17555255
Alignment:
| Q |
100 |
ttcctttttacaaggtatttggctgttgggaaaaagcgggggaggaattcttgcttcagatcatcccaagtagctatggt |
179 |
Q |
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| T |
17555177 |
ttccttttt-caaggtatttgactgttcggaaaaagcggcggaggaatgctttctttaaatcatctcaagtagctatggt |
17555255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 75616 - 75773
Alignment:
| Q |
15 |
tggacaacgcttgagtagctacttgtacctcctcgatgcatcgtagagatattcttcgtctgcttattggaaactaacaatcttcttccttttta--caa |
112 |
Q |
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||||||||||||||| || ||||||||||| | ||||||| ||||||| |||||||||| || |||||||| || |||| |||||||||| ||| |
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| T |
75616 |
tggacaacgcttgaggagtaacttgtacctctccaatgcatcctagagattttcttcgtctttttgttggaaaccgactatctccttccttttttttcaa |
75715 |
T |
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| Q |
113 |
ggtatttggctgttgggaaaaagcgggggaggaattcttgcttcagatcatcccaagt |
170 |
Q |
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| T |
75716 |
ggtatttggttgttgggaaaaggcggtggaggaatgctttcttcagatcatcccaagt |
75773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 54 - 187
Target Start/End: Original strand, 25131616 - 25131749
Alignment:
| Q |
54 |
atcgtagagatattcttcgtctgcttattggaaactaacaatcttcttcctttttacaaggtatttggctgttgggaaaaagcgggggaggaattcttgc |
153 |
Q |
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||||||||||| |||| ||||| ||| || |||| || |||| |||||||||| |||| ||||||| | | |||||||| | |||||||| ||| | |
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| T |
25131616 |
atcgtagagattttctccgtcttcttgttagaaatcgactatctccttccttttttcaagatatttggatatcgggaaaaaacaatggaggaatgctttc |
25131715 |
T |
|
| Q |
154 |
ttcagatcatcccaagtagctatggtggcacttg |
187 |
Q |
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| T |
25131716 |
ttcagatcatcccaagtagctatggtgccacttg |
25131749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 28312959 - 28312788
Alignment:
| Q |
16 |
ggacaacgcttgagtagctacttgtacctcctcgatgcatcgtagagatattcttcgtctgcttattggaaactaacaatcttcttcctttttacaaggt |
115 |
Q |
| |
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||||||| ||||||||| | ||||||||| | ||||||||||||||| | | | || ||| |||||||| ||| |||| |||||| ||| |||||| |
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| T |
28312959 |
ggacaacacttgagtagtaatttgtacctctcccatgcatcgtagagatttattccaccttcttgttggaaaccaactatctccttcctcttttcaaggt |
28312860 |
T |
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| Q |
116 |
atttggctgttgggaaaaagcgggggaggaattcttgcttcagatcatcccaagtagctatggtggcacttg |
187 |
Q |
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| T |
28312859 |
attttgttgtaaggaaaaagcgggggaggaattctttctttagatcatcccaagtagctttggtgccacttg |
28312788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 13372212 - 13372139
Alignment:
| Q |
112 |
aggtatttggctgttgggaaaaagcgggggaggaattcttgcttcagatcatcccaagtagctatggtggcact |
185 |
Q |
| |
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|||||||| ||| |||||||||||||| |||| | | | | ||||||||||| |||||||||||||||| |||| |
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| T |
13372212 |
aggtattttgctattgggaaaaagcggcggagtattgcattcttcagatcattccaagtagctatggtgccact |
13372139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 207 - 318
Target Start/End: Complemental strand, 51745597 - 51745486
Alignment:
| Q |
207 |
acatcaagcagaattagtgttaaagcaagcaaattactaagcttcgtgaatattgagaagctgctagcctcccatgcataatggaaacacttaaatgtgt |
306 |
Q |
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||||||| || ||| |||| |||||||| |||||||| ||||||| | |||||||||| ||| | | |||||||||||||||| ||||||| ||||| | |
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| T |
51745597 |
acatcaaacaaaatcagtgctaaagcaaccaaattacaaagcttcataaatattgagatgctaccaacctcccatgcataatgaaaacactgaaatgctt |
51745498 |
T |
|
| Q |
307 |
tagattagtggc |
318 |
Q |
| |
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|||||||||||| |
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| T |
51745497 |
tagattagtggc |
51745486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 36650115 - 36650167
Alignment:
| Q |
380 |
aaaacagtcggcaagcgacacaccaacaaaacaccccaaaggaggaacacccc |
432 |
Q |
| |
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|||| ||||||||||||||||||| |||||| ||||||| |||||||||||| |
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|
| T |
36650115 |
aaaatagtcggcaagcgacacacccgcaaaactccccaaaagaggaacacccc |
36650167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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