View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8821_low_11 (Length: 309)
Name: NF8821_low_11
Description: NF8821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8821_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 45402953 - 45402672
Alignment:
| Q |
11 |
tgttagtattgctaggaaaaaactaatgtagctttgagattagaggcttaaacattaagagcaactccatgcgtgtttttatggtataagcaaactgttg |
110 |
Q |
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| T |
45402953 |
tgttagtattgctaggaaaaaactaatgtagctttgagattagaggcttaaacattaagagcaactccatgcgtgtttttatggtataagcaaaccgttg |
45402854 |
T |
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| Q |
111 |
cttttcttttaaggtttcagcttgattacgtgccattgcaatagttacactggtgatttacgtacactcannnnnnngtacacttccacgacagatgatt |
210 |
Q |
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| T |
45402853 |
cttttcttttaaggtttcagcttgattacgtgccattgcaatagttacactggtgatttacgcacactca-ttttttgtacacttccacgacagatgatt |
45402755 |
T |
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| Q |
211 |
aatcacgttcaaaaatatattgttaatccaatccatgacaaaaattgtgtattatttaaccgcatgaattgaccacaattttc |
293 |
Q |
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| T |
45402754 |
aatcacgttcaaaaatatattgttaatccaatccatgacaaaaattgtgtattatttaaccgcatgaattgaccacaattttc |
45402672 |
T |
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