View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8821_low_14 (Length: 243)
Name: NF8821_low_14
Description: NF8821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8821_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 488068 - 487835
Alignment:
| Q |
1 |
tctgtcaaagctagttttgattgatcttttgtgcagataattcaagcaaaatatggatgattacagtcattgcagttggggtaggcttggtcataataat |
100 |
Q |
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| T |
488068 |
tctgtcaaagctagttttgattgatcttttgtgcagataattcaagcaaaatatggatgattacagtcattgcagttggggtaggcttggtcataataat |
487969 |
T |
|
| Q |
101 |
tttcatttgctacttgtgctttctcagaaatcggcaaagtaagttgtttggagattgtatatcagtgtttttcatttattttatggtatatattgtagca |
200 |
Q |
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| T |
487968 |
tttcatttgctacttgtgctttctcagaaatcggcaaagtaagttgtttggagattgtatatcagtgtttttcatttattttatggtatatattgtagca |
487869 |
T |
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| Q |
201 |
ccaatactttgaattgaaagtgtttctgatgtcc |
234 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
487868 |
ccaatactttgaattgaaagtgtttctggtgtcc |
487835 |
T |
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