View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8821_low_17 (Length: 221)
Name: NF8821_low_17
Description: NF8821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8821_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33148453 - 33148233
Alignment:
| Q |
1 |
acaaataaaattatgacatgcaagacagaaacagttaacaaaactataaattaaaaaacattcaaagtgaagggaggggaagccgggaaggcataggaaa |
100 |
Q |
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| T |
33148453 |
acaaataaaattatgacatgcaagacagaaacagttaacaaaactataaattaaaaaacattcaaagtgaagggaggggaagccgggaaggcataggaaa |
33148354 |
T |
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| Q |
101 |
actaacaaccgcatgaatttgttaccggcaattgtcaaatgcagaaaattccaattcaagttatttaacaatcactagcagtagaggtgagagaaaaata |
200 |
Q |
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| T |
33148353 |
actaacaaccgcatgaatttgttaccggcaattgtcaaatgcagaaaattccaattcaagttatttaacaatcactagcagtaggggagagagaaaaata |
33148254 |
T |
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| Q |
201 |
aagaagccatagccactactg |
221 |
Q |
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|||||||||| |||||||||| |
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| T |
33148253 |
aagaagccatggccactactg |
33148233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 44196912 - 44196829
Alignment:
| Q |
1 |
acaaataaaattatgacatgcaagacagaaacagttaacaaaactataaattaaaaaacattcaaagtgaagggaggggaagcc |
84 |
Q |
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||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
44196912 |
acaaataaaattatgacattcaagacagaaacagataacacaactagaaattaaaaaatattcaaagtgaagggaggggaagcc |
44196829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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