View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8821_low_3 (Length: 431)
Name: NF8821_low_3
Description: NF8821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8821_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Original strand, 6932882 - 6933277
Alignment:
| Q |
19 |
tcatgactaaaaatataatcttttttcctcaaacaatccaaaagattcaatagcaataggcattgaactacaaaaagaagtcgaaaagttgttgatttct |
118 |
Q |
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| T |
6932882 |
tcatgactaaaaatataatcttttttcctcaaacaatccaaaagattcaatagcaataggcattgaacttcaaaaagaagtcgaaaagttgttgatttct |
6932981 |
T |
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| Q |
119 |
ggtggtttattagacagtaacataattcactgcactaggttcgtgaaccaattcacagggtatcaaattcgagtaatttgatcttggtacgcccaaaatt |
218 |
Q |
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| T |
6932982 |
ggtggtttattagacagtaacataattcactgcactaggttcgtgaaccaattcacagggtatcaaattcaagtaatttgatcttggtacgcccaaaatt |
6933081 |
T |
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| Q |
219 |
gcgtaggattgcagctattggcgtaccagagcaaggagaacgctcattacaaacgtttgaactataaaataaatagaaataaagtgtcaattagaccgta |
318 |
Q |
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| T |
6933082 |
gcgtaggattgcagatattggcgtaccagagcaaggagaatgctcattacaaatgtttgaactataaaataaaaagaaataaagtgtcaattagaccgta |
6933181 |
T |
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| Q |
319 |
tgcgatgaggaccctgcaattaaactgttcttctatagttcccctctatgatatgcgtacaaggatgcagacaccggacacgaaacagacagtaac |
414 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| |
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| T |
6933182 |
tgcgatgatgaccctgcaattaaactgttcttctatagttcccctctatgatatgcggacaaggacgcagacaccggacacgaaatggacagtaac |
6933277 |
T |
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