View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8821_low_4 (Length: 384)
Name: NF8821_low_4
Description: NF8821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8821_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 8460457 - 8460118
Alignment:
| Q |
13 |
agaacctgtggtgcgacaaaatgaatatttaaccactgcgaaacagaaacccacagattgcgaaatgtgtcgcaatataaaaataaatgtgtagtagtct |
112 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8460457 |
agaacctctggtgcgacaaaatgaatatttaaccactgcgaaacagaaacccacagattgcgaaatgtgtcgcaatttaaaaataaatgtgtagtagtct |
8460358 |
T |
|
| Q |
113 |
cttgtaaaccccatcctctaacattaattagttgattgaatgtctactgtgtaattgatcttactacagttattaattattacttcaatgagtttgtctt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8460357 |
tttgtaaaccccatcctctaacattaattagttgattgaatgtctattgtgtaattgatcttactacagttattaattattacttgaatgagtttgtctt |
8460258 |
T |
|
| Q |
213 |
tctcttgataatagcaatttgtagaaggtaactaatgtcgttacacnnnnnnnnncctcaccnnnnnnngtaagatagtaaagcctaagattaattccct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
8460257 |
tctcttgataatagcaatttgtagaaggtaactaatgtcgttacac-ttttttttcctcaccaaaaaaagtaagatagtaaagcctaagattaattccct |
8460159 |
T |
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| Q |
313 |
tgtatgtaaaagaataacttaaaagaatggattagttttta |
353 |
Q |
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| T |
8460158 |
agtatgtaaaagaataacttaaaagaatggattagttttta |
8460118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 8466577 - 8466479
Alignment:
| Q |
160 |
tgtgtaattgatcttactacagttattaattattacttcaatgagtttgtctttctcttgataatagcaatttgtagaaggtaactaatgtcgttacac |
258 |
Q |
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| T |
8466577 |
tgtgtaattgatcttactagagttattaattattactgcaatgagtttgtctttctcctgataatagcaatttgtagaaggtaactaatgtcgttacac |
8466479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 8466432 - 8466380
Alignment:
| Q |
300 |
agattaattcccttgtatgtaaaagaataacttaaaagaatggattagttttta |
353 |
Q |
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||||||||||| |||| |||||||||||||||| |||||||||||||||||||| |
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| T |
8466432 |
agattaattcctttgtgtgtaaaagaataactt-aaagaatggattagttttta |
8466380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 16423340 - 16423462
Alignment:
| Q |
13 |
agaacctgtggtgcgacaaaatgaatatttaaccactgcgaaacagaaacccacagattgcgaaatgtgtcgcaatataaaaataaatgtgtagtagtct |
112 |
Q |
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||||||| | ||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| | ||| |
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| T |
16423340 |
agaacctctagtgcgacaaaatgaatatttaaccattgtgaaacagaaacccacagattgagaaatgtgtcacaatttaaaaataaatgtgtagcattct |
16423439 |
T |
|
| Q |
113 |
cttgtaaaccccatcctctaaca |
135 |
Q |
| |
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|||||||||| || |||| |||| |
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| T |
16423440 |
cttgtaaaccgcaccctccaaca |
16423462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 4637288 - 4637229
Alignment:
| Q |
42 |
taaccactgcgaaacagaaacccacagattgcgaaatgtgtcgcaatataaaaataaatg |
101 |
Q |
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|||||||||||||||| ||||||||||||||| ||| ||| |||||| |||||||||||| |
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| T |
4637288 |
taaccactgcgaaacaaaaacccacagattgccaaaagtggcgcaatgtaaaaataaatg |
4637229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 28407824 - 28407776
Alignment:
| Q |
200 |
atgagtttgtctttctcttgataatagcaatttgtagaaggtaactaat |
248 |
Q |
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|||||||||| ||| |||||||||||| ||||||||||||||||||||| |
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| T |
28407824 |
atgagtttgtgtttatcttgataatagtaatttgtagaaggtaactaat |
28407776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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