View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8821_low_6 (Length: 365)
Name: NF8821_low_6
Description: NF8821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8821_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 245 - 348
Target Start/End: Original strand, 14429326 - 14429429
Alignment:
| Q |
245 |
attagtgattgcagatcatttttaaaaccttgtttgcaataggaaggaagagaagacataatagtgaaattcataatcacaaaatcatcctaagaagtat |
344 |
Q |
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| T |
14429326 |
attagtgattgcagatcatttttaaaaccttgtttgcaataggaaggaggagaagacataatagtgaaattcataatcacaaaatcatccgaagaagtat |
14429425 |
T |
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| Q |
345 |
aaga |
348 |
Q |
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|||| |
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| T |
14429426 |
aaga |
14429429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 14429251 - 14429305
Alignment:
| Q |
1 |
ttatgcaatctacattacaaatgtattgtgctcacataaacttctgaaactatga |
55 |
Q |
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| T |
14429251 |
ttatgcaatctacattacaaatgtattgtgctcacataaacttctgaaactatga |
14429305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 16649407 - 16649460
Alignment:
| Q |
277 |
tttgcaataggaaggaagagaagacataatagtgaaattcataatcacaaaatc |
330 |
Q |
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| T |
16649407 |
tttgtaatagcaaggaagagaaaacacaatagtgaaattcataatcacaaaatc |
16649460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 16649221 - 16649282
Alignment:
| Q |
63 |
ttgtactcacataaacttccaaaactatgattgtgttttgtttcacgttcaaaatgacaatc |
124 |
Q |
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| T |
16649221 |
ttgtactgacatagacttttagaactatgatcgtgttttgtttcacattcaaaacgacaatc |
16649282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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