View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8822_low_2 (Length: 274)
Name: NF8822_low_2
Description: NF8822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8822_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 24374089 - 24373958
Alignment:
| Q |
1 |
gttcgcttttactatcttctctgttacttctttccattaatattcattccatcaataaagtgttatttttaaattccattcatcttctttcatacatgtt |
100 |
Q |
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| T |
24374089 |
gttcgcttatactatcttctctgttacttctttctattaatattcattccatcaataaagtgttatttttaaattccattcatcttctttcatacatgtt |
24373990 |
T |
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| Q |
101 |
tgtttcactccaacatagaattcgataggcaa |
132 |
Q |
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| T |
24373989 |
tgtttcactccaacatagaattcgataggcaa |
24373958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 117 - 265
Target Start/End: Complemental strand, 24373940 - 24373788
Alignment:
| Q |
117 |
agaattcgataggcaaat----ttgtttacgagtgcaatttgacattctattaacaagtacaattatgtagtttatttttacggaagtacaattgtttag |
212 |
Q |
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| T |
24373940 |
agaattcgataggcaaatgtttttgtttacaagtacaatttgacattctattaacaggtacaattgtgtagtttatttttacggaagtacaattgtttag |
24373841 |
T |
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| Q |
213 |
ttctatgcacacgccgcaattattttcaattttaatttttaactcagtattat |
265 |
Q |
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| T |
24373840 |
ttctatgcacacgccgcaattattttcaactttaatttttaactcagtattat |
24373788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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