View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8822_low_4 (Length: 228)
Name: NF8822_low_4
Description: NF8822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8822_low_4 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 50087608 - 50087387
Alignment:
| Q |
7 |
gttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaaagaaggtaaagttggaatatcacttcaaaaagatctta |
106 |
Q |
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| T |
50087608 |
gttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaaagaaggtaaagttggaatatcacttcaaaaagatctta |
50087509 |
T |
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| Q |
107 |
tggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttaccagcttcagaacaattactttttctaatcacactcattgg |
206 |
Q |
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| T |
50087508 |
tggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttaccagcttcagaacaattactttttctcatcacactcattgg |
50087409 |
T |
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| Q |
207 |
tagaaaaatctttaaccctaaa |
228 |
Q |
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| T |
50087408 |
tagaaaaatatttaaccctaaa |
50087387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 23271869 - 23271648
Alignment:
| Q |
7 |
gttagaacacataaaggaggtgatgataaagcatataaatgtgtttttgaagaagaagacaaagaaggtaaagttggaatatcacttcaaaaagatctta |
106 |
Q |
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| T |
23271869 |
gttagaactcacaaaggaggtgacgataaagcttaccgttgcgttttcgaagaagaagacagagaaggtaaagttggaatttcacttcaaaaggatctta |
23271770 |
T |
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| Q |
107 |
tggcaattgcaggtgaagcacttaaatcaaatataacaacaatgggtcctcttgttttaccagcttcagaacaattactttttctaatcacactcattgg |
206 |
Q |
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| T |
23271769 |
tggctatagcaggagaagcattgaaatcaaatataacaactattggtcctcttgttctacctgcttcagaacaattactctttcttttcacactcattgg |
23271670 |
T |
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| Q |
207 |
tagaaaaatctttaaccctaaa |
228 |
Q |
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| T |
23271669 |
aaagaaaatcttcaaccctaaa |
23271648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 205
Target Start/End: Complemental strand, 33446775 - 33446615
Alignment:
| Q |
46 |
tgtgtttttgaagaagaagacaaagaaggtaaagttggaatatcacttc-aaaaagatcttatggcaattgcaggtgaagcacttaaatcaaatataaca |
144 |
Q |
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| T |
33446775 |
tgtgtttttgaggaagaagacaaagaagctaaagttggaatttcatttcgagagtaatcttatggcaatagtaggagaagcattgaaatcaaatataata |
33446676 |
T |
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| Q |
145 |
acaatgggtcctcttgttttaccagcttcagaacaattactttttctaatcacactcattg |
205 |
Q |
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| T |
33446675 |
actattggccatcttgttcttccggtttcaaaacaattgctctttcttttcacacttattg |
33446615 |
T |
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