View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8823_high_1 (Length: 449)
Name: NF8823_high_1
Description: NF8823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8823_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 32 - 431
Target Start/End: Original strand, 6880169 - 6880570
Alignment:
| Q |
32 |
aatgaactcaatatagacaaagaaagtggatgaatactttcaaggattataacttcattctacaataacac--cattagagagctaatgcaatgaggcat |
129 |
Q |
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| T |
6880169 |
aatgaactcaatatagacaaagaaagtggatgaatactttcaaggaatttaacttcattctacaataacacaccattagagagctaatgcaatgaggcat |
6880268 |
T |
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| Q |
130 |
gctcttattcaacaaaggattcttgcatcctctggctaagcaataagttgttcttgaaaaagtttcattatctggaattagatgtagaattttcatcaga |
229 |
Q |
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| T |
6880269 |
gctcttattcaacaaaggattcttgcatcctctggctaagcaataagttgttcttgaaaaagtttcattatctggaattagatgtagaattttcatcaga |
6880368 |
T |
|
| Q |
230 |
attcaggagaattaagattagaatgatcattatttctaatggattaattgagaatatccagaaccatcattttgattataaacttctacaagaaaagagg |
329 |
Q |
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| T |
6880369 |
attcaggagaattaagattagaatgatcattatttctaatggattaattgagaatatccagaaccatcattttgattataaacttctacaagaaaagagg |
6880468 |
T |
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| Q |
330 |
cagttaattgtggaaaggaagacaccaaaatttaatgttggacaagataatattctacagctatgtgtgctcacggtggcaaagataagaagatcaattt |
429 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
6880469 |
caattaattgtggaaaggaagacaccaaaatttaatgttggacaagataatattctacagatatgtgtggtcacggtggcaaagataagaagatcaattt |
6880568 |
T |
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| Q |
430 |
ta |
431 |
Q |
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|| |
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| T |
6880569 |
ta |
6880570 |
T |
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