View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8823_high_3 (Length: 289)
Name: NF8823_high_3
Description: NF8823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8823_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 33 - 273
Target Start/End: Complemental strand, 13472362 - 13472122
Alignment:
| Q |
33 |
tataaatatcttaacattgacataccagaaaaatggaagtcggagatcacgccattcaaagagtttgagcccatctgtagtagccttagagtagttggaa |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13472362 |
tataaatatcttaacattgacataccagaaaaatggaagtcggagatcacgccattcaaagagtttgagcccatctgtagtagccttagagtagttggaa |
13472263 |
T |
|
| Q |
133 |
atcgaatatcttcaaatatcttcccgttgagtctattttcagaaatatcgaatgtttccaaaaatgagaatattgaaagattaggcagtgtgccgttaat |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13472262 |
atcgaatatcttcaaatatcttcccgttgagtctattttcagaaatatcgaatgtttccaaaaatgagaatattgaaagattaggcagtgtgccgttaat |
13472163 |
T |
|
| Q |
233 |
ttgattaaatcttagatttaattgttggagtgaatatctag |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13472162 |
ttgattaaatcttagatttaattgttggagtgaatatctag |
13472122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 33 - 273
Target Start/End: Original strand, 14048030 - 14048270
Alignment:
| Q |
33 |
tataaatatcttaacattgacataccagaaaaatggaagtcggagatcacgccattcaaagagtttgagcccatctgtagtagccttagagtagttggaa |
132 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||| |||||||| ||| | |||||||| || | | | |||| |||||| |||||||||| |
|
|
| T |
14048030 |
tataagtatcttaacattgacataccataaaaatggaagtcagagatcacaccacttaaagagttcgaacttaattccagtatccttagtgtagttggaa |
14048129 |
T |
|
| Q |
133 |
atcgaatatcttcaaatatcttcccgttgagtctattttcagaaatatcgaatgtttccaaaaatgagaatattgaaagattaggcagtgtgccgttaat |
232 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
14048130 |
atcgaatatcttcaaatatcttcccgtttagcctattttcagaaatatcaaatatttccaaaaatgagaatattgagagattaggtagtgtcccattaat |
14048229 |
T |
|
| Q |
233 |
ttgattaaatcttagatttaattgttggagtgaatatctag |
273 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||||||||||| |
|
|
| T |
14048230 |
ttgattgctgcttagatctaattgttgaagtgaatatctag |
14048270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 43 - 273
Target Start/End: Original strand, 13933058 - 13933288
Alignment:
| Q |
43 |
ttaacattgacataccagaaaaatggaagtcggagatcacgccattcaaagagtttgagcccatctgtagtagccttagagtagttggaaatcgaatatc |
142 |
Q |
| |
|
||||||||||||||||||||||||| || || |||||||| ||||||| ||||||||| | ||| |||||| |||||| | ||||||||||||||||| |
|
|
| T |
13933058 |
ttaacattgacataccagaaaaatgaaattcagagatcacaccattcatagagtttgaactcatttgtagtgtccttagtttggttggaaatcgaatatc |
13933157 |
T |
|
| Q |
143 |
ttcaaatatcttcccgttgagtctattttcagaaatatcgaatgtttccaaaaatgagaatattgaaagattaggcagtgtgccgttaatttgattaaat |
242 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||| |||| ||| |||||||| || |||| |||| |
|
|
| T |
13933158 |
ttcagatatcttcccgtttaggctattttcagaaatatcgaatatttccaaaaatgagaatattgagagatcaggtagtgtgccattgattttattactg |
13933257 |
T |
|
| Q |
243 |
cttagatttaattgttggagtgaatatctag |
273 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||| |
|
|
| T |
13933258 |
cttagatctaattcttggagtgagtatctag |
13933288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 47 - 273
Target Start/End: Original strand, 14085381 - 14085607
Alignment:
| Q |
47 |
cattgacataccagaaaaatggaagtcggagatcacgccattcaaagagtttgagcccatctgtagtagccttagagtagttggaaatcgaatatcttca |
146 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||| ||||| |||||| | ||||||||||||||||||| | |
|
|
| T |
14085381 |
cattgacataccagaaaaatggaagtcagagatcacaccatttaaagagtttgaatgcatccgtagtgtccttagtttggttggaaatcgaatatcttta |
14085480 |
T |
|
| Q |
147 |
aatatcttcccgttgagtctattttcagaaatatcgaatgtttccaaaaatgagaatattgaaagattaggcagtgtgccgttaatttgattaaatctta |
246 |
Q |
| |
|
| ||||||||| || |||||||||||||||||||| ||| |||||||||| ||||||||||| |||| ||| |||||||| || ||||||||| |||| |
|
|
| T |
14085481 |
agtatcttcccatttagtctattttcagaaatatcaaatatttccaaaaaggagaatattgacagatcaggtagtgtgccattgatttgattactgctta |
14085580 |
T |
|
| Q |
247 |
gatttaattgttggagtgaatatctag |
273 |
Q |
| |
|
||| ||||||||| ||||||||||||| |
|
|
| T |
14085581 |
gatctaattgttgaagtgaatatctag |
14085607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 44 - 273
Target Start/End: Complemental strand, 13892358 - 13892129
Alignment:
| Q |
44 |
taacattgacataccagaaaaatggaagtcggagatcacgccattcaaagagtttgagcccatctgtagtagccttagagtagttggaaatcgaatatct |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||| | |||||||| || |||| ||| |||||| ||||||||||||||||||||| |
|
|
| T |
13892358 |
taacattgacataccagaaaaatggaagtcagagatcacaccacttaaagagttcgaatccatgctcagtgtccttagtgtagttggaaatcgaatatct |
13892259 |
T |
|
| Q |
144 |
tcaaatatcttcccgttgagtctattttcagaaatatcgaatgtttccaaaaatgagaatattgaaagattaggcagtgtgccgttaatttgattaaatc |
243 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| ||| |||||||| |||||||||| || |||| ||| |||||||| || ||||||||| | |
|
|
| T |
13892258 |
tcaaatatctttccgtttagtctattttcagaaatatcaaatatttccaaagatgagaatatcgagagatcaggtagtgtgccattgatttgattaccgc |
13892159 |
T |
|
| Q |
244 |
ttagatttaattgttggagtgaatatctag |
273 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| |
|
|
| T |
13892158 |
ttagatctaattgttggagtgagtatctag |
13892129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 43 - 273
Target Start/End: Original strand, 14111186 - 14111416
Alignment:
| Q |
43 |
ttaacattgacataccagaaaaatggaagtcggagatcacgccattcaaagagtttgagcccatctgtagtagccttagagtagttggaaatcgaatatc |
142 |
Q |
| |
|
||||||| ||||||||||||||||| || || || ||||| ||| ||| |||||| || |||||||||| | |||||| | | ||||||| ||||||| |
|
|
| T |
14111186 |
ttaacatcgacataccagaaaaatgaaattcagatatcactccactcatagagttcgaacccatctgtaatgtccttagtttggctggaaattgaatatc |
14111285 |
T |
|
| Q |
143 |
ttcaaatatcttcccgttgagtctattttcagaaatatcgaatgtttccaaaaatgagaatattgaaagattaggcagtgtgccgttaatttgattaaat |
242 |
Q |
| |
|
|||| ||||||||| | || |||||||||||||||| ||| | |||||||||| ||||||||| |||| ||| |||||||||||||||||||||||| |
|
|
| T |
14111286 |
ttcagctatcttcccacttagcttattttcagaaatatcaaatatctccaaaaatgggaatattgagagatcaggtagtgtgccgttaatttgattaaat |
14111385 |
T |
|
| Q |
243 |
cttagatttaattgttggagtgaatatctag |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14111386 |
cttagatttaattgttggagtgaatatctag |
14111416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 43 - 273
Target Start/End: Complemental strand, 13874655 - 13874425
Alignment:
| Q |
43 |
ttaacattgacataccagaaaaatggaagtcggagatcacgccattcaaagagtttgagcccatctgtagtagccttagagtagttggaaatcgaatatc |
142 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| |||| ||||||||||| ||||| ||||| |||||| |||||||||| |||||||| |
|
|
| T |
13874655 |
ttaacattgacataccagaaaaatggaattcagagatcacaccatgtaaagagtttgaatccatccgtagtgtccttagtttagttggaaaccgaatatc |
13874556 |
T |
|
| Q |
143 |
ttcaaatatcttcccgttgagtctattttcagaaatatcgaatgtttccaaaaatgagaatattgaaagattaggcagtgtgccgttaatttgattaaat |
242 |
Q |
| |
|
|||| ||||| |||||| || |||||| ||||||||| ||| ||||||| |||||||||||||| |||| ||| ||||| || || |||||||||||| |
|
|
| T |
13874555 |
ttcatgtatctccccgtttagcttatttttagaaatatcaaatatttccaagaatgagaatattgagagatcaggtagtgttccattgatttgattaaat |
13874456 |
T |
|
| Q |
243 |
cttagatttaattgttggagtgaatatctag |
273 |
Q |
| |
|
|| | || ||||||||||||||| ||||||| |
|
|
| T |
13874455 |
ctcaaatataattgttggagtgagtatctag |
13874425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 43 - 271
Target Start/End: Complemental strand, 13862185 - 13861957
Alignment:
| Q |
43 |
ttaacattgacataccagaaaaatggaagtcggagatcacgccattcaaagagtttgagcccatctgtagtagccttagagtagttggaaatcgaatatc |
142 |
Q |
| |
|
||||||||||||||||||||||||| || || |||||||| ||||||| |||||| || |||||| ||||| |||||| | ||||||||||||||||| |
|
|
| T |
13862185 |
ttaacattgacataccagaaaaatgaaattcagagatcacaccattcatagagttcgaacccatccgtagtgtccttagtttggttggaaatcgaatatc |
13862086 |
T |
|
| Q |
143 |
ttcaaatatcttcccgttgagtctattttcagaaatatcgaatgtttccaaaaatgagaatattgaaagattaggcagtgtgccgttaatttgattaaat |
242 |
Q |
| |
|
|||| ||||||||||| | || ||||||| ||||||||| ||| ||||||||| ||||||||||| |||| || |||| || || ||||||||||| |
|
|
| T |
13862085 |
ttcatatatcttcccgcttagcctatttttagaaatatcaaatatttccaaaagggagaatattgagagatcgggttgtgtcccattgatttgattaaag |
13861986 |
T |
|
| Q |
243 |
cttagatttaattgttggagtgaatatct |
271 |
Q |
| |
|
||||||| ||||| | ||||||| ||||| |
|
|
| T |
13861985 |
cttagatctaattctcggagtgagtatct |
13861957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 43 - 226
Target Start/End: Original strand, 14025991 - 14026174
Alignment:
| Q |
43 |
ttaacattgacataccagaaaaatggaagtcggagatcacgccattcaaagagtttgagcccatctgtagtagccttagagtagttggaaatcgaatatc |
142 |
Q |
| |
|
||||||||||||||||||||||||| || || |||||||| ||| | ||| ||| || ||| |||||| || ||| |||||||||||||||||||| |
|
|
| T |
14025991 |
ttaacattgacataccagaaaaatgaaattctgagatcacaccacttaaattgttcgaattcattcgtagtatccatagtgtagttggaaatcgaatatc |
14026090 |
T |
|
| Q |
143 |
ttcaaatatcttcccgttgagtctattttcagaaatatcgaatgtttccaaaaatgagaatattgaaagattaggcagtgtgcc |
226 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||| |||| ||| |||||||| |
|
|
| T |
14026091 |
ttcaaatatcttcccgtttagtctattttcagaaatatcaaacatttccaaaaataagaatattgagagatcaggtagtgtgcc |
14026174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 14015913 - 14016020
Alignment:
| Q |
166 |
tattttcagaaatatcgaatgtttccaaaaatgagaatattgaaagattaggcagtgtgccgttaatttgattaaatcttagatttaattgttggagtga |
265 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||| |||| ||| |||||||| || |||| |||| ||||||| ||||| ||||||||| |
|
|
| T |
14015913 |
tattttcagaaatatgaaatatttccaaaaatgagaatattgagagatcaggtagtgtgccattgattttattactgcttagatataattcttggagtga |
14016012 |
T |
|
| Q |
266 |
atatctag |
273 |
Q |
| |
|
||||||| |
|
|
| T |
14016013 |
gtatctag |
14016020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 14015862 - 14015907
Alignment:
| Q |
43 |
ttaacattgacataccagaaaaatggaagtcggagatcacgccatt |
88 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || ||||| ||||| |
|
|
| T |
14015862 |
ttaacattgacataccagcaaaatggaagtctgaaatcacaccatt |
14015907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University