View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8823_high_4 (Length: 258)
Name: NF8823_high_4
Description: NF8823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8823_high_4 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 13472500 - 13472748
Alignment:
| Q |
1 |
atcttgatatttctaatggtggaatttcagataatgttcccgagtggttttggtctaaactatcatcccaagactgctctataatcaacatttcctataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
13472500 |
atcttgatatttctaatggtggaatttcagataatgttccagagtggttttggtctaaactatcatcccaagactgctctagaatcaacatttcctataa |
13472599 |
T |
|
| Q |
101 |
caatctcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
13472600 |
caatctcaaaggattaattccaaatcttcaagtaaaaaatcattgttcttttttatatctttcatcaaatgaatttgaagggtccattccaccatttcta |
13472699 |
T |
|
| Q |
201 |
cgaggttctgggtttattgatctgtccaaaaacaaattctctgcttctc |
249 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||||| ||||| |
|
|
| T |
13472700 |
agaggttcttcatttattgatctgtccaaaaataagttctctgattctc |
13472748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 13874806 - 13875044
Alignment:
| Q |
4 |
ttgatatttctaatggtggaatttcagataatgttcccgagtggttttggtctaaactatcatcccaagactgctctataatcaacatttcctataacaa |
103 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| | |||||||||||| || ||||| |
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|
| T |
13874806 |
ttgatatttctaattctggaatttcagataatgttcccgagtggttttgggctaaactatcatcacaagagtgcaagacaatcaacatttcatacaacaa |
13874905 |
T |
|
| Q |
104 |
tctcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctacga |
203 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||| ||||||| |||||||| | |||||||| |||||||||||||||| || |
|
|
| T |
13874906 |
tctcaaaggattaattccgaatcttcatgtaaaaaatcattgttcttttttatctcttgcatcaaatcaatttgaaggctccattccaccatttctcaga |
13875005 |
T |
|
| Q |
204 |
ggttctgggtttattgatctgtccaaaaacaaattctct |
242 |
Q |
| |
|
||||||| | ||||||| |||||||||||||||||||| |
|
|
| T |
13875006 |
ggttctgtatctattgatttgtccaaaaacaaattctct |
13875044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 248
Target Start/End: Complemental strand, 14111037 - 14110791
Alignment:
| Q |
2 |
tcttgatatttctaatggtggaatttcagataatgttcccgagtggttttggtctaaactatcatcccaagactgctctataatcaacatttcctataac |
101 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||| ||| | ||| | |||||| |||| | || |
|
|
| T |
14111037 |
tcttgatatttctaatgctggaatttcagataatgttccggagtggttttgggctaaactatcatcacaaaagtgcaggagcatcaacgtttcaaacaat |
14110938 |
T |
|
| Q |
102 |
aatctcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctac |
201 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| |||||| |||||||| ||||||||||||||||||| |
|
|
| T |
14110937 |
aatctcaaaggaataattccaaatcttcaagtaaaaaattattgctctagtttatctctttcattaaatgaatttgaagggcccattccaccatttctac |
14110838 |
T |
|
| Q |
202 |
gaggttctgggtttattgatctgtccaaaaacaaattctctgcttct |
248 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||||||| |||| |
|
|
| T |
14110837 |
aaggttcccatgttattgacctgtccaaaaacaagttctctgattct |
14110791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 13892507 - 13892747
Alignment:
| Q |
1 |
atcttgatatttctaatggtggaatttcagataatgttcccgagtggttttggtctaaactatcatcccaagactgctctataatcaacatttcctataa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||| |||||| |||| ||| | ||||||||||| | || |
|
|
| T |
13892507 |
atcttgatatttctaatgctggaatttcagataatgttccagagtggttttgggctaaattatcattaaaagagtgcagaagcatcaacatttcaaacaa |
13892606 |
T |
|
| Q |
101 |
caatctcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
13892607 |
taatctcaaaggattaattccaaatcttcaagtcaaaaattattgttctattttatctctttcatcaaatgaatttgaagggcctattccaccatttcta |
13892706 |
T |
|
| Q |
201 |
cgaggttctgggtttattgatctgtccaaaaacaaattctc |
241 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
13892707 |
aaaggttctacacttattgacttgtccaaaaacaaattctc |
13892747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 14025843 - 14025595
Alignment:
| Q |
1 |
atcttgatatttctaatggtggaatttcagataatgttcccgagtggttttggtctaaactatcatcccaagactgctctataatcaacatttcctataa |
100 |
Q |
| |
|
||||||||||||| || | ||||||||||||||||||||| |||||||||||| ||||||||||||| ||| ||| | ||||||||||| | || |
|
|
| T |
14025843 |
atcttgatatttcgaaggctggaatttcagataatgttccagagtggttttgggctaaactatcatcacaatggtgcaacaacatcaacatttcaaacaa |
14025744 |
T |
|
| Q |
101 |
caatctcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
14025743 |
taatctcaaaggattaattccaaatcttcaagtcaaaaatcgttgttctgttttatctctttcatcaaatgaatttgaagggcctattccaccatttcta |
14025644 |
T |
|
| Q |
201 |
cgaggttctgggtttattgatctgtccaaaaacaaattctctgcttctc |
249 |
Q |
| |
|
||||||| ||| |||| ||||||||||||||||||||| ||||| |
|
|
| T |
14025643 |
aaaggttctacagttactgatttgtccaaaaacaaattctctgattctc |
14025595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 13932910 - 13932673
Alignment:
| Q |
1 |
atcttgatatttctaatggtggaatttcagataatgttcccgagtggttttggtctaaactatcatcccaagactgctctataatcaacatttcctataa |
100 |
Q |
| |
|
||||||||||||| || | ||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||| | ||||| ||||| | || |
|
|
| T |
13932910 |
atcttgatatttcgaaggctggaatttcagataatgttccagagtggttttgggctaaactatcatcacaagaatgcaacagcatcaatatttcaaacaa |
13932811 |
T |
|
| Q |
101 |
caatctcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttcta |
200 |
Q |
| |
|
||||||||||| | |||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||| || |||||| ||||| || |
|
|
| T |
13932810 |
taatctcaaaggttcaattccaaatcttcaagtcaaaaatcactgttctcttttatctctttcatcaaatgaatttgaagggcctattccagcattttta |
13932711 |
T |
|
| Q |
201 |
cgaggttctgggtttattgatctgtccaaaaacaaatt |
238 |
Q |
| |
|
| |||||||| |||||||| |||||||||||||||| |
|
|
| T |
13932710 |
caaggttctgcacttattgatttgtccaaaaacaaatt |
13932673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 14047892 - 14047652
Alignment:
| Q |
1 |
atcttgatatttctaatggtggaatttcagataatgttcccgagtggttttggtctaaactatcatcccaagactgctctataatcaacatttcctataa |
100 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||| |||||||||||| ||||||||||||| | ||| ||| | || ||||||| | || |
|
|
| T |
14047892 |
atcttgatatttcgaatgctggaatttcagataatgttccagagtggttttgggctaaactatcatcaccagagtgcagcaacatgaacattttaaacaa |
14047793 |
T |
|
| Q |
101 |
caatctcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttcta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||| |||||||| ||| |||||| |||||| |
|
|
| T |
14047792 |
taatctcaaaggattaattccaaatcttcaagccaaaagtcaatgttcttttttatctctttcatcaaatgaatttgaagggtccactccaccttttcta |
14047693 |
T |
|
| Q |
201 |
cgaggttctgggtttattgatctgtccaaaaacaaattctc |
241 |
Q |
| |
|
| ||||||||| || |||||||| |||||||| |||||||| |
|
|
| T |
14047692 |
ctaggttctggattaattgatctttccaaaaataaattctc |
14047652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 14015714 - 14015464
Alignment:
| Q |
1 |
atcttgatatttctaatggtggaatttcagataatgttcccgagtggttttggtctaaactatcatcccaagactgctctataatcaacatttcctataa |
100 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| |||| |||||||||||| ||||||||||||| ||||| |||| ||||||||||| | || |
|
|
| T |
14015714 |
atcttgatatttcgaatgctggaatttcagataatattccagagtggttttgggctaaactatcatcacaagagtgctaccgcatcaacatttcaaacaa |
14015615 |
T |
|
| Q |
101 |
caatctcaaaggattaattccaaatcttcaagtaaaaaatca--ttgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttc |
198 |
Q |
| |
|
||||||||||| | |||||||||||||||||| |||| | | || | |||||||||||||||||| |||||||| || |||||| |||||| |
|
|
| T |
14015614 |
taatctcaaaggttcaattccaaatcttcaagtcaaaattaattttttttttttatatctctttcatcaaatgaatttgaagggcctattccagcatttc |
14015515 |
T |
|
| Q |
199 |
tacgaggttctgggtttattgatctgtccaaaaacaaattctctgcttctc |
249 |
Q |
| |
|
||| |||||||| |||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
14015514 |
tacaaggttctgaacttattgatttgtccaaaaacaaattctctgattctc |
14015464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 13862338 - 13862573
Alignment:
| Q |
6 |
gatatttctaatggtggaatttcagataatgttcccgagtggttttggtctaaactatcatcccaagactgctctataatcaacatttcctataacaatc |
105 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| |||||||||||| ||| ||||||| ||| ||| || ||| |||||||| | || |||| |
|
|
| T |
13862338 |
gatatttctaatgctgaaatttcagataatgttcctgagtggttttgggataatctatcattgcaaatgtgcaatacaataaacatttcaaacaataatc |
13862437 |
T |
|
| Q |
106 |
tcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctacgagg |
205 |
Q |
| |
|
| ||||||| |||||||||| | ||||||||||||| ||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
13862438 |
ttaaaggatcaattccaaatttaaaagtaaaaaatcactgttctcttttatctctttcatcaaatgattttgaagggcccattccaccatttctacgagg |
13862537 |
T |
|
| Q |
206 |
ttctgggtttattgatctgtccaaaaacaaattctc |
241 |
Q |
| |
|
|||||| |||||||||| || ||||| |||||||| |
|
|
| T |
13862538 |
ttctggacttattgatctatcgaaaaataaattctc |
13862573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 14085229 - 14084991
Alignment:
| Q |
1 |
atcttgatatttctaatggtggaatttcagataatgttcccgagtggttttggtctaaactatcatcccaagactgctctataatcaacatttcctataa |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| |||| |||||||||||| | ||||||||||| ||||| ||| | ||||||| |||| || || |
|
|
| T |
14085229 |
atcttgatatttctaatgctggagtttcagataatattccagagtggttttgggcaaaactatcatcacaagagtgcaggacaatcaacctttcttacaa |
14085130 |
T |
|
| Q |
101 |
caatctcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttcta |
200 |
Q |
| |
|
|||| ||||||||| |||||| ||||| || ||| |||| ||||| || ||| ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
14085129 |
caatttcaaaggatcaattccgaatctccacataagaaattattgttcttttttatttctgtcatcaaatgaatttgaaggtcccattccaccatttctt |
14085030 |
T |
|
| Q |
201 |
cgaggttctgggtttattgatctgtccaaaaacaaattc |
239 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| |
|
|
| T |
14085029 |
agaggttccataaatattgatctgtccaaaaataaattc |
14084991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 13912284 - 13912137
Alignment:
| Q |
102 |
aatctcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctac |
201 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
13912284 |
aatctcaaaggcttaattccaaatcttcaagtaaaaaatctttgttctgttttatcactttcatcaaatgaatttgaagggcccattccaccatttctca |
13912185 |
T |
|
| Q |
202 |
gaggttctgggtttattgatctgtccaaaaacaaattctctgcttctc |
249 |
Q |
| |
|
||||||| |||||||| ||||||||||||| ||||||| ||||| |
|
|
| T |
13912184 |
aaggttctacagttattgatttgtccaaaaacaagttctctgattctc |
13912137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 13928901 - 13928829
Alignment:
| Q |
1 |
atcttgatatttctaatggtggaatttcagataatgttcccgagtggttttggtctaaactatcatcccaaga |
73 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
13928901 |
atcttgatatttctaatgctggaatttcagataatgttcccgagtggttttgggctaaactatcatcacaaga |
13928829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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