View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8823_high_6 (Length: 222)
Name: NF8823_high_6
Description: NF8823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8823_high_6 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 124570 - 124788
Alignment:
| Q |
1 |
gtattaaatacaaaatgcattaaacaaaagcttaattaaaagaatgatgatttaacctataaggacatcgggccttagtacgcccttctttatcatatca |
100 |
Q |
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| T |
124570 |
gtattaaatacaaaatgcattaaacaaaagcttaattaaaagaatgatgatttaacctataaggacatcgggccttagtacgcccttctttatcatatca |
124669 |
T |
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| Q |
101 |
aattccttgaagcagaatggtggtttgggtatgtcatgtttgtcgatgctatcaatagttgttgcagcattaaacaccagcctaaacttatgattagttg |
200 |
Q |
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| T |
124670 |
aattccttgaagcagaatggtggtttgggtatgtcatgtttatcgatgctatcgatagttgttgcaacattaaacaccagcctaaacttatgattagttg |
124769 |
T |
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| Q |
201 |
ctttgatgtccatctcatt |
219 |
Q |
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|||||||| ||||||||| |
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| T |
124770 |
ctttgatggtcatctcatt |
124788 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 23699791 - 23699885
Alignment:
| Q |
50 |
atttaacctataaggacatcgggccttagtacgcccttctttatcatatcaaattccttgaagcagaatggtggtttgggtatgtcatgtttgtc |
144 |
Q |
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| T |
23699791 |
attttacctataaggacatctggccttactattcccttcttgatctcatcaaactccttgaaactgaatgatggtctaggtatgtcatgtttgtc |
23699885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 204
Target Start/End: Original strand, 22079490 - 22079639
Alignment:
| Q |
55 |
acctataaggacatcgggccttagtacgcccttctttatcatatcaaattccttgaagcagaatggtggtttgggtatgtcatgtttgtcgatgctatca |
154 |
Q |
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| T |
22079490 |
acctattaggacatctggccttagtgctcccttcttgatctcatcaaagtccttaaagttgaaagatggtttgggaatgtcatgcttgtcaatgttgtca |
22079589 |
T |
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| Q |
155 |
atagttgttgcagcattaaacaccagcctaaacttatgattagttgcttt |
204 |
Q |
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| T |
22079590 |
acacttgttccaccattaaacaccaaccaaaatggatgatcagttgcttt |
22079639 |
T |
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