View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8823_low_1 (Length: 576)
Name: NF8823_low_1
Description: NF8823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8823_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 20 - 561
Target Start/End: Original strand, 33357931 - 33358458
Alignment:
| Q |
20 |
caaaaaacacaatatcattgttatataagtcttgttatatacacacaaaaggccacttcatcttcttagcaatgagtgcattagtttttgtccaaaaaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
33357931 |
caaaaaacacaatatcattgttatataagtcttgttatatacacacaaaaggccacttcatcttcttagcaatgagtgcattagcttttgtccaaaaaat |
33358030 |
T |
|
| Q |
120 |
attagagttgtccatactagttaactatcattgtacttgcatctagcaaatttccaccacttacaacatcaacatatggtttaatgcagatgttgctgtc |
219 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
33358031 |
attagagttgtccatactagttaactaccattgtacttgcatctagcaaatttccaccacttacaacatcaacatatggttcaatgtagatgttgctgtc |
33358130 |
T |
|
| Q |
220 |
aaactgatttgtcactctttgagaattgttgtcctgcaaatttggacaaacaggaaattaagatggaatatccatatatacgaggtgattacaaaacttg |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
33358131 |
aaactgatttgtcactctttgagaattgttgtcctgcaaatttggacaaacaggaaattaagatggaatatccatatatacaaggtgattacaaaacttg |
33358230 |
T |
|
| Q |
320 |
taaataaaataaaacatagattagttcctctgccatcactctgtttggttagtttacttggcttcttaatagctttttcgattgcagacatttttctttt |
419 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33358231 |
taaataaaataaaacatacattagttcctctgtcatcactctgtttggttagtttacttggcttcttaatagctttttcgattgcagacatttttctttt |
33358330 |
T |
|
| Q |
420 |
tgatggagggcggcctttacgtttaacccgcaatggactgtgaatttcagtaccattgtttggatttgagtcaccattgaaacttcttttaacattttca |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
33358331 |
tgatggagggcggcctttacgtttaacccgcaatggactgtgaatttcagtaccattgtttggatttgagtca--------------tttaacattttca |
33358416 |
T |
|
| Q |
520 |
gttgtagcattcctggtgggtaaatcagaagtaaaatgatgt |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33358417 |
gttgtagcattcctggtgggtaaatcagaagtaaaatgatgt |
33358458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 561
Target Start/End: Original strand, 37602013 - 37602551
Alignment:
| Q |
20 |
caaaaaacacaatatcattgttatataagtcttgttatatacacacaaaaggccacttcatcttcttagcaatgagtgcattagtttttgtccaaaaaat |
119 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| |||||||||||| ||| || |||||||| | |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37602013 |
caaaaaacacaatatcatagttataaaagtctggttatatacaca-aaagggtcacttcatatacttagcaatgagtgcattagcttttgtccaaaaaat |
37602111 |
T |
|
| Q |
120 |
attagagttgtccatactagttaactatcattgtacttgcatctagcaaatttccaccacttacaacatcaacatatggtttaatgcagatgttgctgtc |
219 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
37602112 |
attagagctgtccatgctagttaactatcattgtacttgcatccagcacatttccaccactaacaacatcaagagatgatttaatgcagatgttgctgtc |
37602211 |
T |
|
| Q |
220 |
aaactgatttgtcactctttgagaattgttgtcctgcaaatttggacaaacaggaaattaagatggaatatccatatatacgaggtgattacaaaacttg |
319 |
Q |
| |
|
|||||||||||||||||||| || |||| | |||| |||||||||||||||| ||||||||||| | |||||||||||| |||||||||||||||| |
|
|
| T |
37602212 |
aaactgatttgtcactctttcagtattgatatcctacaaatttggacaaacaaaaaattaagatgca--atccatatatacatggtgattacaaaacttc |
37602309 |
T |
|
| Q |
320 |
taaataaaataaaacatagattagttcctctgccatcactctgtttggttagtttacttggcttcttaatagctttttcgattgcagacatttttctttt |
419 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||||||||||||| | | ||||||||| ||||| | |||||| | ||| ||||||||||| |
|
|
| T |
37602310 |
taaataaaataaaacatacattagtccctctatcatcactctgtttgtgtcgattacttggcctcttagcaaatttttcatgtatagatatttttctttt |
37602409 |
T |
|
| Q |
420 |
tgatggagggcggcctttacgtttaacccgcaatggactgtgaatttcagtaccattgtttggatttgagtcaccattgaaacttcttttaacattttca |
519 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
37602410 |
tgatggagggcgacctttacgttttacccgcaatggactgtgaatttttgtaccattgtttggatttgagtcaccattgaaacttcctttaatattttca |
37602509 |
T |
|
| Q |
520 |
gttgtagcattcctggtgggtaaatcagaagtaaaatgatgt |
561 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
37602510 |
gctgtagcattcctggtgggtaaatcagaagcaaactgatgt |
37602551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 5744309 - 5744179
Alignment:
| Q |
51 |
ttgttatatacacacaaaagg-ccacttcatcttcttagcaatgagtgcattagtttttgtccaaaaaatattagagttgtccatactagttaactatca |
149 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||| || |
|
|
| T |
5744309 |
ttgttatatacacacaaaagggccacttcatctttttagcaatgagtgcattagcttttgtccaaaaaatattagagctgttcatactagttaactacca |
5744210 |
T |
|
| Q |
150 |
ttgtacttgcatctagcaaatttccaccact |
180 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |
|
|
| T |
5744209 |
ttgtacttgcatctagcaaatctccaccact |
5744179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 441 - 522
Target Start/End: Complemental strand, 38778732 - 38778651
Alignment:
| Q |
441 |
tttaacccgcaatggactgtgaatttcagtaccattgtttggatttgagtcaccattgaaacttcttttaacattttcagtt |
522 |
Q |
| |
|
||||||||||| ||||||||||||| || |||| |||||||||||||||||| || |||||||||| |||||| | |||||| |
|
|
| T |
38778732 |
tttaacccgcactggactgtgaattccaataccgttgtttggatttgagtcatcaatgaaacttctgttaacaatgtcagtt |
38778651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 20 - 561
Target Start/End: Original strand, 18082190 - 18082717
Alignment:
| Q |
20 |
caaaaaacacaatatcattgttatataagtcttgttatatacacacaaaaggccacttcatcttcttagcaatgagtgcattagtttttgtccaaaaaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18082190 |
caaaaaacacaatatcattgttatataagtcttgttatatacacacaaaaggccacttcatcttcttagcaatgagtgcattagcttttgtccaaaaaat |
18082289 |
T |
|
| Q |
120 |
attagagttgtccatactagttaactatcattgtacttgcatctagcaaatttccaccacttacaacatcaacatatggtttaatgcagatgttgctgtc |
219 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
18082290 |
attagagttgtccatactagttaactaccattgtacttgcatctagcaaatttccaccacttacaacatcaacatatggttcaatgtagatgttgctgtc |
18082389 |
T |
|
| Q |
220 |
aaactgatttgtcactctttgagaattgttgtcctgcaaatttggacaaacaggaaattaagatggaatatccatatatacgaggtgattacaaaacttg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18082390 |
aaactgatttgtcactctttgagaattgttgtcctgtaaatttggacaaacaggaaattaagatggaatatccatatatacaaggtgattacaaaacttg |
18082489 |
T |
|
| Q |
320 |
taaataaaataaaacatagattagttcctctgccatcactctgtttggttagtttacttggcttcttaatagctttttcgattgcagacatttttctttt |
419 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18082490 |
taaataaaataaaacatacattagttcctctgtcatcactctgtttggttagtttacttggcttcttaatagctttttcgattgcagacatttttctttt |
18082589 |
T |
|
| Q |
420 |
tgatggagggcggcctttacgtttaacccgcaatggactgtgaatttcagtaccattgtttggatttgagtcaccattgaaacttcttttaacattttca |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18082590 |
tgatggagggcggcctttacgtttaacccgcaatggactgtgaatttcagtaccattgtttggatttgagtca--------------tttaacattttca |
18082675 |
T |
|
| Q |
520 |
gttgtagcattcctggtgggtaaatcagaagtaaaatgatgt |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18082676 |
gttgtagcattcctggtgggtaaatcagaagtaaaatgatgt |
18082717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 27659747 - 27659634
Alignment:
| Q |
20 |
caaaaaacacaatatcattgttatataagtcttgttatatacacacaaaaggccacttcatcttcttagcaatgagtgcattagtttttgtccaaaaaat |
119 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| ||| |||||||| ||| || |||||||||| ||||||||||||||||| | ||||||||||||| | |
|
|
| T |
27659747 |
caaaaaacacaatatcatagttataaaagtctggttgtatacaca-aaagggtcacttcatctacttagcaatgagtgcatgtgcttttgtccaaaaact |
27659649 |
T |
|
| Q |
120 |
attagagttgtccat |
134 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
27659648 |
attagagctgtccat |
27659634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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