View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8823_low_3 (Length: 403)
Name: NF8823_low_3
Description: NF8823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8823_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 37717519 - 37717891
Alignment:
| Q |
19 |
aataattatgtctgtcacatacgtctgatggccgcgaccactcgttcatccattgaatgtcataccacctccaaaattgtatatccccagtagaattcat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37717519 |
aataattatgtctgtcacatacgtctgatggccgcgaccactcgttcatccattgaatgtcataccacctccaaaattgtatatccccagtagaattcat |
37717618 |
T |
|
| Q |
119 |
taataaccttgatttatcgtaattaaaagatcgttgtttgatggttatgtctctatacttgtgcaatgaattagaggtcgagttctccaacaagtcaaga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37717619 |
taataaccttgatttatcgtaattaaaagatcgttgtttgatggttatgtctctatacttgtgcaatgaattagaggtcgagttctccaacaagtcaaga |
37717718 |
T |
|
| Q |
219 |
atgatgttgaacatcttatctgaattgtgtccatcaaatgcccaataaagttgtgactgattgtttactctatagcttcgagggtcgcctgtttgtgcct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37717719 |
atgatgttgaacatcttatctgaattgtgtccatcaaatgcccaataaagttgtgactgattgtttactctatagcttcgagggtcgcctgtttgtgcct |
37717818 |
T |
|
| Q |
319 |
tctgaaaggcgaagcttccaattcctggatcgttctcatttttccaagaactcaaagttaaattgatgtccat |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
37717819 |
tctgaaaggcgaagcttccaattcctggatcgttctcatttttccaagaactcaaagctaaatttatgtccat |
37717891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University