View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8823_low_4 (Length: 394)
Name: NF8823_low_4
Description: NF8823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8823_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 160 - 324
Target Start/End: Complemental strand, 8019513 - 8019349
Alignment:
| Q |
160 |
aggttttaactaattgcatatgattatgaaagttgttagtccttaacaattgtatgattttaggctgatatcactggtctggtatatgcacaaagtgttg |
259 |
Q |
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| T |
8019513 |
aggttttaactaattgcatatgattatgaaagttgttagtccttaacgattgtatgattttaggctaatatcactagtctggcatatgcacaaagtgttg |
8019414 |
T |
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| Q |
260 |
tcgaaacttgtagcaaccagattgaagttgattgtcgatcgttaaagggaggcaaatattggatg |
324 |
Q |
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| T |
8019413 |
tcgaaagttgtagcaaccagattgaagttgattgtcgatcgttaaagggaggcaaatattggatg |
8019349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 318 - 378
Target Start/End: Complemental strand, 8019325 - 8019265
Alignment:
| Q |
318 |
ttggatgtggtcatgtccaaaatgaatttcgtagtcttatggagaagatggactatgatgt |
378 |
Q |
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| T |
8019325 |
ttggatgtggtcatgtccaaaatgaatttcgtagtcttatggagaagatggactatgatgt |
8019265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 8019558 - 8019528
Alignment:
| Q |
18 |
aaaaggttgttgagatatttgatatactaga |
48 |
Q |
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| T |
8019558 |
aaaaggttgttgagatatttgatatactaga |
8019528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 17746779 - 17746838
Alignment:
| Q |
18 |
aaaaggttgttgagatatttgatatactagagtgtttattcaaactcacaagttctctct |
77 |
Q |
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| T |
17746779 |
aaaaggttgtgaagatatttgatatacgagagtgttgattcaaactcacagtttctctct |
17746838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 19048099 - 19048158
Alignment:
| Q |
18 |
aaaaggttgttgagatatttgatatactagagtgtttattcaaactcacaagttctctct |
77 |
Q |
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| T |
19048099 |
aaaaggttgtgaagatatttgatatacgagagtgttgattcaaactcacagtttctctct |
19048158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 28001919 - 28001872
Alignment:
| Q |
19 |
aaaggttgttgagatatttgatatactagagtgtttattcaaactcac |
66 |
Q |
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| T |
28001919 |
aaaggttgtggagatatttaatatactagagtgtcgattcaaactcac |
28001872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 12217255 - 12217309
Alignment:
| Q |
112 |
aacttgttccacaaactatccaggtagttagttttaactaactgtaataggtttta |
167 |
Q |
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| T |
12217255 |
aacttgttccacaagttatctag-tagttagttgtaactaactgtaataggtttta |
12217309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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