View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8823_low_5 (Length: 361)
Name: NF8823_low_5
Description: NF8823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8823_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 350
Target Start/End: Complemental strand, 29237525 - 29237195
Alignment:
| Q |
20 |
ctgagcactctatccacgagaatgcctatggtttggcccgatatgcagtcatatgccaagagaatggacttgtacctattgttgagcctgagatccttgt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29237525 |
ctgagcactctatccacgagaatgcctatggtttggcccgatatgcagtcatatgccaagagaatggacttgtaccaattgttgagcctgagatccttgt |
29237426 |
T |
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| Q |
120 |
tgatggacctcatgacattcaaaagtgtgctgctgttaccgagaaggtccttgcagcatgctacaaggccttgaatgaccaccatgtcctccttgaagga |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29237425 |
tgatggacctcatgacattcaaaagtgtgctgctgttaccgagaaggtccttgcagcatgctacaaggccttgaatgaccaccatgtcctccttgaaggc |
29237326 |
T |
|
| Q |
220 |
actctcttgaagcctaacatggttacccctggatctgatgcaccaaaggttgcacccgaggttgttgctgagcacaccgttagagctttgcagagaaccg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29237325 |
actctcttgaagcctaacatggttacccctggatctgatgcaccaaaggttgcacccgaggttgttgctgagcacaccgttagagctttgcagagaaccg |
29237226 |
T |
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| Q |
320 |
tacctgctgcagtcccagctgttgttttctt |
350 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
29237225 |
tacctgctgcagtcccagctgttgttttctt |
29237195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 20 - 350
Target Start/End: Complemental strand, 29233775 - 29233445
Alignment:
| Q |
20 |
ctgagcactctatccacgagaatgcctatggtttggcccgatatgcagtcatatgccaagagaatggacttgtacctattgttgagcctgagatccttgt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29233775 |
ctgagcactctatccacgagaatgcctatggtttggcccgatatgcagtcatatgccaagagaatggacttgtaccaattgttgagcctgagatccttgt |
29233676 |
T |
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| Q |
120 |
tgatggacctcatgacattcaaaagtgtgctgctgttaccgagaaggtccttgcagcatgctacaaggccttgaatgaccaccatgtcctccttgaagga |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29233675 |
tgatggacctcatgacattcaaaagtgtgctgctgttaccgagaaggtccttgcagcatgctacaaggcctagaatgaccaccatgtcctccttgaaggc |
29233576 |
T |
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| Q |
220 |
actctcttgaagcctaacatggttacccctggatctgatgcaccaaaggttgcacccgaggttgttgctgagcacaccgttagagctttgcagagaaccg |
319 |
Q |
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| T |
29233575 |
actctcttgaagcctaacatggttacccctggatctgatgcaccaaaggttgcacccgaggttgttgctgagcacaccgttagagctttgcagagaaccg |
29233476 |
T |
|
| Q |
320 |
tacctgctgcagtcccagctgttgttttctt |
350 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
29233475 |
tacctgctgcagtcccagctgttgttttctt |
29233445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 258
Target Start/End: Original strand, 42280437 - 42280627
Alignment:
| Q |
68 |
tcatatgccaagagaatggacttgtacctattgttgagcctgagatccttgttgatggacctcatgacattcaaaagtgtgctgctgttaccgagaaggt |
167 |
Q |
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|||| ||||| |||||||| ||||| |||||||||||||||||||| | |||||| |||||||||| || || || ||||| || || | || |
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| T |
42280437 |
tcatttgccaggagaatggccttgtgcctattgttgagcctgagattttaaccgatggatctcatgacatcgccaaatgcgccgctgtcactgaaactgt |
42280536 |
T |
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| Q |
168 |
ccttgcagcatgctacaaggccttgaatgaccaccatgtcctccttgaaggaactctcttgaagcctaacatggttacccctggatctgat |
258 |
Q |
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|||||||| |||||||| ||||||| || |||||||| |||||||||||||| | |||||||||||||||||||| || |||||| |
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| T |
42280537 |
acttgcagctgtttacaaggcactgaatgatcagcatgtccttcttgaaggaactcttctcaagcctaacatggttaccccaggttctgat |
42280627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 31 - 254
Target Start/End: Complemental strand, 26629932 - 26629709
Alignment:
| Q |
31 |
atccacgagaatgcctatggtttggcccgatatgcagtcatatgccaagagaatggacttgtacctattgttgagcctgagatccttgttgatggacctc |
130 |
Q |
| |
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|||||||| || ||||||||||| || || || || |||||||| ||||||||||| | || || ||||| ||||||||||| || || |||||||| | |
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| T |
26629932 |
atccacgaaaacgcctatggtttagctcgttacgccgtcatatgtcaagagaatggtttggttccaattgtggagcctgagattctagtggatggacccc |
26629833 |
T |
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| Q |
131 |
atgacattcaaaagtgtgctgctgttaccgagaaggtccttgcagcatgctacaaggccttgaatgaccaccatgtcctccttgaaggaactctcttgaa |
230 |
Q |
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| |||||| |||||| |||| ||| || || || ||||||||||| |||||||| | | |||||| ||||| || |||||||| ||||| ||||| |
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| T |
26629832 |
acgacattgcaaagtgcgctgatgtaacagaacgcgttcttgcagcatgttacaaggctctaagtgaccatcatgttcttcttgaaggtactcttttgaa |
26629733 |
T |
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| Q |
231 |
gcctaacatggttacccctggatc |
254 |
Q |
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|||||| |||||||| || ||||| |
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| T |
26629732 |
gcctaatatggttacaccaggatc |
26629709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 42028068 - 42028152
Alignment:
| Q |
67 |
gtcatatgccaagagaatggacttgtacctattgttgagcctgagatccttgttgatggacctcatgacattcaaaagtgtgctg |
151 |
Q |
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|||||||||||||||||||| || || ||||| || ||||| || ||||| || |||||| |||||||||| | |||||||||| |
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| T |
42028068 |
gtcatatgccaagagaatggcctagttcctatagtggagcccgaaatcctagtggatggatctcatgacatcaacaagtgtgctg |
42028152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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