View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8824_high_10 (Length: 245)

Name: NF8824_high_10
Description: NF8824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8824_high_10
NF8824_high_10
[»] chr4 (23 HSPs)
chr4 (62-245)||(13768532-13768715)
chr4 (62-244)||(43892751-43892933)
chr4 (68-242)||(46721876-46722050)
chr4 (129-245)||(32824561-32824677)
chr4 (168-245)||(39606297-39606374)
chr4 (168-245)||(27512926-27513003)
chr4 (168-245)||(32595098-32595175)
chr4 (191-245)||(4608127-4608181)
chr4 (168-245)||(23237517-23237594)
chr4 (198-245)||(18493822-18493869)
chr4 (168-235)||(21733894-21733961)
chr4 (198-245)||(22375927-22375974)
chr4 (198-245)||(54508600-54508647)
chr4 (183-245)||(20618760-20618822)
chr4 (168-244)||(20167514-20167590)
chr4 (198-245)||(34021337-34021384)
chr4 (200-244)||(23609302-23609346)
chr4 (204-244)||(37927787-37927827)
chr4 (203-245)||(44222981-44223023)
chr4 (168-236)||(18502008-18502076)
chr4 (198-245)||(8762863-8762910)
chr4 (198-245)||(30226686-30226733)
chr4 (26-57)||(32824268-32824299)
[»] chr7 (25 HSPs)
chr7 (62-245)||(83846-84029)
chr7 (62-245)||(46211905-46212088)
chr7 (62-245)||(48609334-48609517)
chr7 (70-245)||(45809876-45810051)
chr7 (62-245)||(758575-758747)
chr7 (62-216)||(39719643-39719797)
chr7 (125-245)||(2826751-2826871)
chr7 (168-245)||(23333304-23333381)
chr7 (169-235)||(11468614-11468680)
chr7 (183-245)||(36558351-36558413)
chr7 (168-237)||(27098888-27098957)
chr7 (168-237)||(27179346-27179415)
chr7 (168-245)||(27571602-27571679)
chr7 (168-244)||(33036083-33036159)
chr7 (199-245)||(2410955-2411001)
chr7 (169-235)||(5437147-5437213)
chr7 (190-245)||(33335981-33336036)
chr7 (198-245)||(41532415-41532462)
chr7 (26-63)||(305091-305128)
chr7 (26-63)||(2828989-2829026)
chr7 (183-241)||(37205796-37205853)
chr7 (207-245)||(39719314-39719352)
chr7 (168-245)||(38892150-38892226)
chr7 (183-239)||(19532361-19532417)
chr7 (208-245)||(31174510-31174547)
[»] chr6 (9 HSPs)
chr6 (62-245)||(29363773-29363956)
chr6 (62-245)||(34729509-34729692)
chr6 (64-245)||(3886144-3886325)
chr6 (64-245)||(583189-583370)
chr6 (150-245)||(30386778-30386873)
chr6 (168-245)||(13703078-13703155)
chr6 (168-245)||(7590495-7590572)
chr6 (26-63)||(30385893-30385930)
chr6 (168-239)||(5122289-5122360)
[»] chr3 (15 HSPs)
chr3 (62-245)||(17653216-17653399)
chr3 (62-245)||(46823538-46823721)
chr3 (64-242)||(30342670-30342848)
chr3 (68-238)||(40285645-40285816)
chr3 (62-211)||(21295699-21295849)
chr3 (75-245)||(35734322-35734489)
chr3 (183-245)||(35238724-35238786)
chr3 (168-245)||(22775260-22775337)
chr3 (168-245)||(37057528-37057605)
chr3 (168-245)||(37224394-37224471)
chr3 (191-245)||(26769844-26769898)
chr3 (183-245)||(30500937-30500999)
chr3 (200-245)||(15871369-15871414)
chr3 (128-164)||(35734270-35734306)
chr3 (198-245)||(52724608-52724655)
[»] scaffold0049 (2 HSPs)
scaffold0049 (62-245)||(15006-15189)
scaffold0049 (64-245)||(46878-47059)
[»] chr5 (13 HSPs)
chr5 (62-245)||(17769205-17769388)
chr5 (62-245)||(39685558-39685741)
chr5 (108-245)||(13517247-13517383)
chr5 (168-245)||(39570835-39570912)
chr5 (174-245)||(6735915-6735986)
chr5 (75-245)||(8403309-8403479)
chr5 (169-245)||(21360908-21360984)
chr5 (168-237)||(42580444-42580513)
chr5 (168-239)||(12947294-12947365)
chr5 (168-239)||(12933081-12933152)
chr5 (62-92)||(13517385-13517415)
chr5 (212-245)||(42092340-42092373)
chr5 (171-227)||(13734616-13734672)
[»] chr8 (9 HSPs)
chr8 (62-245)||(21441822-21442005)
chr8 (62-245)||(41323410-41323593)
chr8 (62-245)||(4072456-4072639)
chr8 (64-245)||(18606022-18606203)
chr8 (169-245)||(10713855-10713931)
chr8 (168-245)||(33538360-33538437)
chr8 (175-245)||(30932146-30932216)
chr8 (64-105)||(2811316-2811357)
chr8 (193-245)||(1233785-1233837)
[»] chr1 (18 HSPs)
chr1 (62-245)||(10619797-10619980)
chr1 (62-245)||(15757410-15757593)
chr1 (70-245)||(7493401-7493576)
chr1 (132-245)||(44429776-44429889)
chr1 (71-211)||(48770403-48770542)
chr1 (68-213)||(33409802-33409948)
chr1 (168-245)||(44592591-44592668)
chr1 (170-245)||(36156955-36157030)
chr1 (168-245)||(27773557-27773634)
chr1 (190-245)||(39618458-39618513)
chr1 (168-245)||(43410941-43411018)
chr1 (169-235)||(29681092-29681158)
chr1 (195-245)||(50303961-50304011)
chr1 (168-244)||(6764491-6764567)
chr1 (168-244)||(43022554-43022630)
chr1 (198-245)||(50099609-50099656)
chr1 (169-235)||(48366676-48366742)
chr1 (191-245)||(26633000-26633053)
[»] chr2 (18 HSPs)
chr2 (62-245)||(5382553-5382740)
chr2 (64-242)||(10585107-10585285)
chr2 (64-245)||(36314444-36314626)
chr2 (64-245)||(1592961-1593142)
chr2 (75-211)||(7494759-7494895)
chr2 (132-245)||(1043292-1043405)
chr2 (132-245)||(9190281-9190394)
chr2 (69-189)||(22333390-22333510)
chr2 (75-242)||(10412674-10412838)
chr2 (75-203)||(12563719-12563847)
chr2 (168-245)||(2096106-2096183)
chr2 (168-245)||(41732611-41732688)
chr2 (190-245)||(14160588-14160643)
chr2 (168-235)||(21278626-21278693)
chr2 (198-245)||(21613392-21613439)
chr2 (68-245)||(19590798-19590976)
chr2 (198-245)||(9754043-9754090)
chr2 (198-245)||(14950635-14950682)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 62 - 245
Target Start/End: Complemental strand, 13768715 - 13768532
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13768715 atattgttattatttattatttatctcttttgggtgttaatctttcggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 13768616  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  13768615 gatagaaaaaattatttcacttaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacc 13768532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 62 - 244
Target Start/End: Original strand, 43892751 - 43892933
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||||| |||||||||||||||||||||||||| |||||||||||||||    
T  43892751 atattgttattatttattatttatctcttttggatgttaatctttcgattcttatacaacattatcaaataatttgaagttcgatcggaagttaaataaa 43892850  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatac 244  Q
    ||||| |||||||||||||  |||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||    
T  43892851 gatagaaaaaattatttcatctaaaattaaacttggggcagctaaatatatattattaggggtagctaaatataaaaatatac 43892933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 68 - 242
Target Start/End: Complemental strand, 46722050 - 46721876
Alignment:
Q  68 ttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagt 167  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||||||||||||| || ||||||||||||||||||||| ||| ||||||||||| |     
T  46722050 ttattatttattatttatctcttttgggtgttattcttccggttcctatacgacatgattaaataatttgaagttcgaccgaaagctaaataaagatgga 46721951  T
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatat 242  Q
    || |||||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||||||| ||||||||||    
T  46721950 aagaattatttcacttaaaataaaatttggggtagctaaatatatattattaggggtagctaaaaataaaaatat 46721876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 245
Target Start/End: Original strand, 32824561 - 32824677
Alignment:
Q  129 aataatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagct 228  Q
    ||||||||||||||||||||||||||||||||| ||   ||||||||||||||||||||| ||| ||| | ||||||||||| ||||| ||||||||| |    
T  32824561 aataatttgaagttcgaccggaagttaaataaaaatgaaaaaaattatttcacttaaaataaaatttgggatagccaaatatttattactaggggtagtt 32824660  T
Q  229 aaatataaaaatatacc 245  Q
    |||||||||||||||||    
T  32824661 aaatataaaaatatacc 32824677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 39606297 - 39606374
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||| ||| ||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39606297 aaaaattattgcacctaaaatcgaacttgaggtagccaaatatatattattaggggtagctaaacataaaaatatacc 39606374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 27513003 - 27512926
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||| ||| ||||||  |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  27513003 aaaaattattacacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 27512926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 32595098 - 32595175
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||| ||| ||||||  |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  32595098 aaaaattattgcacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 32595175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 4608181 - 4608127
Alignment:
Q  191 aacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4608181 aacttgaggtagccaaatatatattattaggggtagctaaacataaaaatatacc 4608127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 23237517 - 23237594
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||| ||  ||||||  |||||| || ||||||||||||||||||||||||||||||| |||||||||||||    
T  23237517 aaaaattattacatctaaaatcgaacttggggcagccaaatatatattattaggggtagctaaacataaaaatatacc 23237594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 18493822 - 18493869
Alignment:
Q  198 ggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  18493822 ggtagccaaatatatattattaggggtagctaaacataaaaatatacc 18493869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 21733961 - 21733894
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatata 235  Q
    |||| ||||| ||| |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  21733961 aaaagttattccacctaaaatcaaacttggggtagccaactatatattattaggggtagctaaatata 21733894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 22375927 - 22375974
Alignment:
Q  198 ggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  22375927 ggtagccaaatatatattattaggggtagctaaacataaaaatatacc 22375974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 54508600 - 54508647
Alignment:
Q  198 ggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  54508600 ggtagccaaatatatattattaggggtagctaaacataaaaatatacc 54508647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 20618822 - 20618760
Alignment:
Q  183 taaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||| ||| |||||||||| |||||||||||||||||||| |||| |||||||||||    
T  20618822 taaaattaaatttggggtagccaaacatatattattaggggtagcttaatacaaaaatatacc 20618760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 20167590 - 20167514
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatac 244  Q
    ||||||||||  || |||||| ||||||| |||||||||||||||||||  || ||||||| |||||||||||||||    
T  20167590 aaaaattattctacctaaaatcaaacttggggtagccaaatatatattaccagaggtagcttaatataaaaatatac 20167514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 34021337 - 34021384
Alignment:
Q  198 ggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||    
T  34021337 ggtagccaaatatatactattaggggtagctaaacataaaaatatacc 34021384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 23609302 - 23609346
Alignment:
Q  200 tagccaaatatatattattaggggtagctaaatataaaaatatac 244  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||    
T  23609302 tagccaaatatatattattagggatagcaaaatataaaaatatac 23609346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 37927827 - 37927787
Alignment:
Q  204 caaatatatattattaggggtagctaaatataaaaatatac 244  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  37927827 caaatatatattattatgggtagctaaatataaaaatatac 37927787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 44222981 - 44223023
Alignment:
Q  203 ccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||||||||||||||||| |||| |||||||||||||    
T  44222981 ccaaatatatattattaggggtagttaaacataaaaatatacc 44223023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 18502076 - 18502008
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataa 236  Q
    |||||||||| ||| ||||||  |||||  |||||||||||||||||||| |||||||| |||| ||||    
T  18502076 aaaaattattacacctaaaatcgaacttagggtagccaaatatatattatcaggggtagttaaacataa 18502008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 8762863 - 8762910
Alignment:
Q  198 ggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||| |||||| | ||||| ||||||||||||||||||||||||||    
T  8762863 ggtagctaaatattttttatttggggtagctaaatataaaaatatacc 8762910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 30226686 - 30226733
Alignment:
Q  198 ggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||| ||||||||||||||||||| ||||| |||||||| ||||||||    
T  30226686 ggtaaccaaatatatattattaggagtagccaaatataataatatacc 30226733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 57
Target Start/End: Original strand, 32824268 - 32824299
Alignment:
Q  26 aagtgtagtatgaaaataaattcaaatgatga 57  Q
    ||||||||||||||||||||||||||||||||    
T  32824268 aagtgtagtatgaaaataaattcaaatgatga 32824299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 62 - 245
Target Start/End: Original strand, 83846 - 84029
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  83846 atattgttattatttattatttatctcttttgggtgttaatctttcggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 83945  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||| |||| |||||||||||||||||||| ||| |||| | |||||||||||||||||||||||||||||||||||||||||    
T  83946 gatagaaaaatttatttcacttaaaattaaatttggggtaactaaatatatattattaggggtagctaaatataaaaatatacc 84029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 62 - 245
Target Start/End: Original strand, 46211905 - 46212088
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46211905 atattgttattatttattatttatctcttttgggtgttaatctttcggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 46212004  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    || || ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||  |||||||||||||||||||||||    
T  46212005 gaaagaaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattagaagtagctaaatataaaaatatacc 46212088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 62 - 245
Target Start/End: Original strand, 48609334 - 48609517
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48609334 atattgttattatttattatttatctctttttggtattaatctttcggttcctatacgacattatcaaataatttgaagttcgaccgaaagttaaataaa 48609433  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||    
T  48609434 gatagaaaaaattatttcacttaaaattaaacttggggtagctaaatatatattattaggggtagttaaatataaaaatatacc 48609517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 70 - 245
Target Start/End: Original strand, 45809876 - 45810051
Alignment:
Q  70 attatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagtaa 169  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| | ||    
T  45809876 attatttattatttatctcttttgggtgttagtcttccggttcctatacgacatgattaaataatttgaagttcgaccggaagctaaataaagatggaaa 45809975  T
Q  170 aaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45809976 aaattatttcacttaaaataaaacttggggtagccaaatatatattattgggggtagctaaatataaaaatatacc 45810051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 62 - 245
Target Start/End: Complemental strand, 758747 - 758575
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||             
T  758747 atattgttattatttattatttatctcttttgggtgttaatctttcggttcctatatgacattatcaaataatttgaagttcgaccgaaag--------- 758657  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
      ||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||| |||||| ||||||||||||||||||    
T  758656 --tagaaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattaagggtagataaatataaaaatatacc 758575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 62 - 216
Target Start/End: Complemental strand, 39719797 - 39719643
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||    
T  39719797 atattgttattatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttaaagttcgaccgaaagttaaataaa 39719698  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatatta 216  Q
    ||||| |||||||||||||  ||||||||||| || | |||| ||||||||||||    
T  39719697 gatagaaaaaattatttcatctaaaattaaacctgggatagctaaatatatatta 39719643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 2826871 - 2826751
Alignment:
Q  125 atcaaataatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggt 224  Q
    ||||||||||||||| || ||||||||| ||| ||||||||| ||||||||||||||||| |||||||||||  ||||| |||||||||||||||| | |    
T  2826871 atcaaataatttgaattttgaccggaaggtaattaaagatagaaaaaattatttcacttacaattaaacttggagtagctaaatatatattattagagat 2826772  T
Q  225 agctaaatataaaaatatacc 245  Q
    |||||||||||||||||||||    
T  2826771 agctaaatataaaaatatacc 2826751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 23333304 - 23333381
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||| ||| ||||||  ||||||  ||||||||||||||||||||||||||||||||| |||||||||||||    
T  23333304 aaaaattattgcacctaaaatcgaacttggagtagccaaatatatattattaggggtagctaaacataaaaatatacc 23333381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 11468680 - 11468614
Alignment:
Q  169 aaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatata 235  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||||||||| |||||| |||||||    
T  11468680 aaaattatttcaactaaaatcaaacttgaggtagccaaatatatattattagaggtagccaaatata 11468614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 36558413 - 36558351
Alignment:
Q  183 taaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||| ||||||||||||||||||||||||||||||||||||  | ||||||||||||||||    
T  36558413 taaaatcaaacttgaggtagccaaatatatattattaggggtaatttaatataaaaatatacc 36558351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 27098888 - 27098957
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaa 237  Q
    |||||||||| || ||||||||||| ||| | |||||||||||||||||||||||||||||||| |||||    
T  27098888 aaaaattattacatttaaaattaaatttgggatagccaaatatatattattaggggtagctaaacataaa 27098957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 27179415 - 27179346
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaa 237  Q
    |||||||||| || ||||||||||| ||| | |||||||||||||||||||||||||||||||| |||||    
T  27179415 aaaaattattacatttaaaattaaatttgggatagccaaatatatattattaggggtagctaaacataaa 27179346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 27571602 - 27571679
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||| ||| ||||||  ||| |  |||||||||||||||||||||||||||||||||| |||||||||||||    
T  27571602 aaaaattattacacctaaaatcgaacatagggtagccaaatatatattattaggggtagctaaacataaaaatatacc 27571679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 33036083 - 33036159
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatac 244  Q
    |||||||||| ||| ||||||  |||||| |||||||||||||||||||| |||||||| |||| ||||||||||||    
T  33036083 aaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcaggggtagttaaacataaaaatatac 33036159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 2411001 - 2410955
Alignment:
Q  199 gtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  2411001 gtagccaaatatatattattaggggtagcttaatataaaaatatacc 2410955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 5437147 - 5437213
Alignment:
Q  169 aaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatata 235  Q
    ||||||||||||  |||||| ||||||| |||||||||||||||||||| ||||||||||| |||||    
T  5437147 aaaattatttcaactaaaatcaaacttggggtagccaaatatatattatcaggggtagctatatata 5437213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 33335981 - 33336036
Alignment:
Q  190 aaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||| |||||||    
T  33335981 aaacttggggtagttaaatatatattattaggggtagctaaatataaatatatacc 33336036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 41532462 - 41532415
Alignment:
Q  198 ggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||    
T  41532462 ggtagccaaatatatattattaggggtagccaaatataataatatacc 41532415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 305091 - 305128
Alignment:
Q  26 aagtgtagtatgaaaataaattcaaatgatgatagcat 63  Q
    ||||||||||||||||||||||||||||||||||||||    
T  305091 aagtgtagtatgaaaataaattcaaatgatgatagcat 305128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 2829026 - 2828989
Alignment:
Q  26 aagtgtagtatgaaaataaattcaaatgatgatagcat 63  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2829026 aagtgtagtatgaaaataaattcaaatgatgatagcat 2828989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 37205796 - 37205853
Alignment:
Q  183 taaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaata 241  Q
    |||||| ||||||| |||||||||||||||||||| |||| ||||| ||||||||||||    
T  37205796 taaaatcaaacttg-ggtagccaaatatatattataagggatagcttaatataaaaata 37205853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 39719352 - 39719314
Alignment:
Q  207 atatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  39719352 atatatattattagggatagctaaatataaaaatatacc 39719314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 38892150 - 38892226
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||| ||| ||||||  |||||| ||||  |||||||||||||| | ||||||||||| |||||||||||||    
T  38892150 aaaaattattacacctaaaatcgaacttggggtaatcaaatatatattatca-gggtagctaaacataaaaatatacc 38892226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 19532361 - 19532417
Alignment:
Q  183 taaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaa 239  Q
    |||||| ||| ||| |||||||||||||||||||||| |||||||| |||| |||||    
T  19532361 taaaatcaaatttggggtagccaaatatatattattaagggtagcttaataaaaaaa 19532417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 31174510 - 31174547
Alignment:
Q  208 tatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  31174510 tatatattattagggatagttaaatataaaaatatacc 31174547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 62 - 245
Target Start/End: Original strand, 29363773 - 29363956
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29363773 atattgttattatttattatttatctcttttgggtgttaatctttcggttcctatacaacattatcaaataatttgaagttcgaccggaagttaaataaa 29363872  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  29363873 gatagaaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattaggagtagctaaatataaaaatatacc 29363956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 62 - 245
Target Start/End: Complemental strand, 34729692 - 34729509
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||||||||    
T  34729692 atattgttattatttattatttatctctttttggtattaatctttcggttcctatacgatattatcaaataatttgaagttcgatcgaaagttaaataaa 34729593  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||| ||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||    
T  34729592 gatagaaaaaattatttcacttaaaattaaacttggggtagctaaatatatactattaggggtagctaaatataaaaatatacc 34729509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 64 - 245
Target Start/End: Complemental strand, 3886325 - 3886144
Alignment:
Q  64 attgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaaga 163  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || |||| |||||||| ||  |||||||| ||||| ||||||||||||||||||||    
T  3886325 attgttattatttattatttatctcttttgggtgttattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaaga 3886226  T
Q  164 tagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    | | ||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3886225 tggaaaaaattatttcatttaaaataaaacttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 3886144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 64 - 245
Target Start/End: Original strand, 583189 - 583370
Alignment:
Q  64 attgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaaga 163  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| || | || || ||||| ||  |||||||| ||||| ||||||||||||||||||||    
T  583189 attgttattatttcttatttatctcttttgggtgttattctttcggattctgtaggacatgattgaataatttaaagtttgaccggaagttaaataaaga 583288  T
Q  164 tagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    | | ||||||||||||| ||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  583289 tggaaaaaattatttcatttaaaataaaacttggggtaaccaaatatatattattaggggtagctaaatataaaaatatacc 583370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 30386778 - 30386873
Alignment:
Q  150 aagttaaataaagatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  30386778 aagttaaataaagatagaaaaaaatatttcacttaaaattaaacttgagatagctaaatatatattattaggggtagctaaatataaaaatatacc 30386873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 13703155 - 13703078
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13703155 aaaaattatttcatctaaaattaaacttgaggtagctaaatatatattattaggggtagctaaatataaaaatatacc 13703078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 7590495 - 7590572
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||| ||  ||||||  |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  7590495 aaaaattattacatctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 7590572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 30385893 - 30385930
Alignment:
Q  26 aagtgtagtatgaaaataaattcaaatgatgatagcat 63  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30385893 aagtgtagtatgaaaataaattcaaatgatgatagcat 30385930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 5122289 - 5122360
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaa 239  Q
    |||| ||||||||| ||||||  |||||| ||||| |||| ||||||||||||||||| ||| |||||||||    
T  5122289 aaaatttatttcacataaaatcgaacttggggtagtcaaaaatatattattaggggtaactatatataaaaa 5122360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 62 - 245
Target Start/End: Original strand, 17653216 - 17653399
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17653216 atattgttattatttattatttatctctttttggtattaatctttcggttcctatacgacattatcaaataatttgaagttcgaccgaaagttaaataaa 17653315  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||    
T  17653316 gatagaaaaaattatttcacttaaaattaaacttggggtagctaaatatatattattaggggtagttaaatataaaaatatacc 17653399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 62 - 245
Target Start/End: Complemental strand, 46823721 - 46823538
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46823721 atattgttattatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaagttaaataaa 46823622  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||| |||||||||||||  |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||    
T  46823621 gatagaaaaaattatttcatctaaaattaaacttggggtagctaattatatattattaggggtagctaaatataaaaatatacc 46823538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 64 - 242
Target Start/End: Complemental strand, 30342848 - 30342670
Alignment:
Q  64 attgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaaga 163  Q
    ||||||||||||||||||||||||||||||||||||| ||||  | |||||||||||||| || ||||||||||||||||||||| ||| ||||||||||    
T  30342848 attgttattatttattatttatctcttttgggtgttattcttccgattcctatacgacatgattaaataatttgaagttcgaccgaaagctaaataaaga 30342749  T
Q  164 tagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatat 242  Q
    | | || |||||||||||||||||| ||| ||| |||||| |||||||||||||||| ||||| |||| ||||||||||    
T  30342748 tggaaagaattatttcacttaaaataaaatttggggtagctaaatatatattattagaggtagttaaaaataaaaatat 30342670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 68 - 238
Target Start/End: Complemental strand, 40285816 - 40285645
Alignment:
Q  68 ttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatag- 166  Q
    |||||||||||||||||||| |||||||||||||||||  |||||||||| ||||| || ||||||||||||||||||||| ||| ||||||| ||| |     
T  40285816 ttattatttattatttatcttttttgggtgttaatcttccggttcctatatgacatgattaaataatttgaagttcgaccgaaagctaaataatgattga 40285717  T
Q  167 taaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaa 238  Q
     ||||| ||||||||||||||| ||||||||| |||| |||||||||||||||||| |||||||||||||||    
T  40285716 aaaaaaatatttcacttaaaatcaaacttgagatagctaaatatatattattagggatagctaaatataaaa 40285645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 62 - 211
Target Start/End: Complemental strand, 21295849 - 21295699
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaat-aa 160  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  21295849 atattgttattatttattatttatctcttttaggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaagttaaataaa 21295750  T
Q  161 agatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatata 211  Q
    |||||| |||||||||||||  |||||||||| ||| |||||| |||||||    
T  21295749 agatagaaaaaattatttcatctaaaattaaatttggggtagctaaatata 21295699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 75 - 245
Target Start/End: Original strand, 35734322 - 35734489
Alignment:
Q  75 ttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagat-agtaaaaat 173  Q
    |||||||||||||  ||||||||||||||||  |||||||||| || | | | ||||||||| |||||||  |||||| |||||| |||| |  ||||||    
T  35734322 ttattatttatct--tttgggtgttaatcttccggttcctatatgataatgttaaataatttcaagttcg--cggaagctaaatatagatgaaaaaaaat 35734417  T
Q  174 tatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||||||||||||| ||| ||  |||||| ||||| ||||||||| ||||| |||||||||||||||||||    
T  35734418 tatttcacttaaaataaaatttagggtagctaaatacatattattaagggtaactaaatataaaaatatacc 35734489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 35238724 - 35238786
Alignment:
Q  183 taaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35238724 taaaattaaacttggggtagccaaatatatattattaggggtagcttaatataaaaatatacc 35238786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 22775260 - 22775337
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||| ||| ||||||  |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  22775260 aaaaattattacacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 22775337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 37057605 - 37057528
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||| ||||| ||| ||||||  |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  37057605 aaaagttattgcacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 37057528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 37224471 - 37224394
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||| ||| ||||||  |||||| | |||||||||||||||||||||||||||||||| |||||||||||||    
T  37224471 aaaaattattacacctaaaatcgaacttgggatagccaaatatatattattaggggtagctaaacataaaaatatacc 37224394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 191 - 245
Target Start/End: Original strand, 26769844 - 26769898
Alignment:
Q  191 aacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  26769844 aacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 26769898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 30500937 - 30500999
Alignment:
Q  183 taaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||| ||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||    
T  30500937 taaaatcaaacttggggtagccagatatatattattaggggtagcttaatataaaaatatacc 30500999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 15871369 - 15871414
Alignment:
Q  200 tagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||||| |||| || |||||||||||||||||||||||||    
T  15871369 tagccaaatataaattactaagggtagctaaatataaaaatatacc 15871414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 35734270 - 35734306
Alignment:
Q  128 aaataatttgaagttcgaccggaagttaaataaagat 164  Q
    ||||||||||||||||||||||||| |||||||||||    
T  35734270 aaataatttgaagttcgaccggaagctaaataaagat 35734306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 52724655 - 52724608
Alignment:
Q  198 ggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||||||||||||||||||||||| |||  |||||||| ||||||||    
T  52724655 ggtagccaaatatatattattagggatagtcaaatataataatatacc 52724608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 62 - 245
Target Start/End: Complemental strand, 15189 - 15006
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  15189 atattgttattatttattatttatctctttcgggtgttaatctttcggttcctatacgacattatcaaataattaaaagttcgaccggaagttaaataaa 15090  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||| ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| ||||||||||||||    
T  15089 gatagaaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattaggggtagctaattataaaaatatacc 15006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 64 - 245
Target Start/End: Complemental strand, 47059 - 46878
Alignment:
Q  64 attgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaaga 163  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || |||| |||||||| ||  |||||||| ||||| ||||||||||||||||||||    
T  47059 attgttattatttattatttatctcttttgggtgttattctttcggatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaaga 46960  T
Q  164 tagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    | | ||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46959 tggaaaaaattatttcatttaaaataaaacttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 46878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 62 - 245
Target Start/End: Original strand, 17769205 - 17769388
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17769205 atattgttattatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaagttaaataaa 17769304  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||| |||||||||||||  |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  17769305 gatagaaaaaattatttcatctaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacc 17769388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 62 - 245
Target Start/End: Original strand, 39685558 - 39685741
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    |||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  39685558 atattgttattatttattatttatctttttttggtgttaatctttcggttcctatacgacattatcaaata-tttgaagttcgatcggaagttaaataaa 39685656  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattag-gggtagctaaatataaaaatatacc 245  Q
     |||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||| || ||||||||||||||||||||||    
T  39685657 aatagaaaaaattatttcacttaaaattaaacttggggtagctaaatatatattattagaggatagctaaatataaaaatatacc 39685741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 108 - 245
Target Start/End: Complemental strand, 13517383 - 13517247
Alignment:
Q  108 ggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttgaggtagccaaa 207  Q
    ||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||  |||||||||||||  |||||||||||||| |||||  |||    
T  13517383 ggttcttatacaacattatcaaataatttgaatttcgaccgaaagttaaataaagataaaaaaaattatttcatctaaaattaaacttggggtagttaaa 13517284  T
Q  208 tatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||||| |||||||||||||||||||||||||    
T  13517283 tatatattatta-gggtagctaaatataaaaatatacc 13517247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 39570912 - 39570835
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||| ||| ||||||  |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  39570912 aaaaattattacacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 39570835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 6735986 - 6735915
Alignment:
Q  174 tatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||| ||| ||||||  |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6735986 tattgcacctaaaatcgaacttggggtagccaaatatatattattagaggtagctaaatataaaaatatacc 6735915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 245
Target Start/End: Complemental strand, 8403479 - 8403309
Alignment:
Q  75 ttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagtaaaa-at 173  Q
    ||||||||||| | |||| |||||||||| |  ||| |||||||||||   |||||||||||||||||| || | ||  ||||||| ||| | |||| ||    
T  8403479 ttattatttatttgttttaggtgttaatcctccggt-cctatacgacacgttcaaataatttgaagttcaactgaaaactaaataaggatggaaaaagat 8403381  T
Q  174 tatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||| |||||||||| ||| || ||||||| ||||  |||||||||| |||||||||||| ||| |||||||    
T  8403380 tattccacttaaaataaaatttaaggtagctaaatgcatattattagaggtagctaaataaaaatatatacc 8403309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 21360984 - 21360908
Alignment:
Q  169 aaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||| |  ||||||  ||| || |||||||||||||||||||||||||||||| |||||||| ||||||||    
T  21360984 aaaattatttaaactaaaatcgaacatggggtagccaaatatatattattaggggtagccaaatataataatatacc 21360908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 42580513 - 42580444
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaa 237  Q
    |||||||||||||| |||||| ||| ||| | |||||||||||||||||||| |||||| | ||||||||    
T  42580513 aaaaattatttcacctaaaatcaaaattgggatagccaaatatatattattaagggtagattaatataaa 42580444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 12947294 - 12947365
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaa 239  Q
    |||||||||| |||  |||||  |||||| |||||| |||||||||||||||| |||||||||| |||||||    
T  12947294 aaaaattattacacaaaaaatcgaacttggggtagcaaaatatatattattagaggtagctaaacataaaaa 12947365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 12933081 - 12933152
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaa 239  Q
    |||||||||| |||  |||||  |||||| |||| | |||||||||||||||| |||||||||| |||||||    
T  12933081 aaaaattattacacaaaaaatcgaacttggggtaacaaaatatatattattagaggtagctaaacataaaaa 12933152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 92
Target Start/End: Complemental strand, 13517415 - 13517385
Alignment:
Q  62 atattgttattatttattatttatctctttt 92  Q
    |||||||||||||||||||||||||||||||    
T  13517415 atattgttattatttattatttatctctttt 13517385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 42092340 - 42092373
Alignment:
Q  212 tattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||||||||||||| |||||||||||||    
T  42092340 tattattaggggtagctaaacataaaaatatacc 42092373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 13734672 - 13734616
Alignment:
Q  171 aattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagc 227  Q
    ||||||||||  |||||| ||||||  | || |||||||||||||||||||||||||    
T  13734672 aattatttcatctaaaatcaaacttaggataaccaaatatatattattaggggtagc 13734616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 62 - 245
Target Start/End: Original strand, 21441822 - 21442005
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21441822 atattgttattatttattatttatctcttttggatgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaagttaaataaa 21441921  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||| |||||||||||||  |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  21441922 gatagaaaaaattatttcatctaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacc 21442005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 62 - 245
Target Start/End: Original strand, 41323410 - 41323593
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||||||||||||| |||||||||    
T  41323410 atattgttattatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgaccggaaattaaataaa 41323509  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||| |||||||||||||  |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||    
T  41323510 gatagaaaaaattatttcatctaaaattaaacttggggtagctaattatatattattaggggtagctaaatataaaaatatacc 41323593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 62 - 245
Target Start/End: Original strand, 4072456 - 4072639
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||||| |||| ||||||||||||    
T  4072456 atattgttattatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttctaccgtaagttaaataaa 4072555  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||| |||||||||||||  |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||    
T  4072556 gatagaaaaaattatttcatctaaaattaaacttggggtagctaattatatattattaggggtagctaaatataaaaatatacc 4072639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 64 - 245
Target Start/End: Complemental strand, 18606203 - 18606022
Alignment:
Q  64 attgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaaga 163  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || || | |||||||| ||  |||||||| ||||| ||||||||||||||||||||    
T  18606203 attgttattatttattatttatctcttttgggtgttattctttcggatcatgtacgacatgattgaataatttaaagtttgaccggaagttaaataaaga 18606104  T
Q  164 tagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    | | ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18606103 tggaaaaaattatttcacttaaaataaaacttggggtagccaaatatatattattaggggtagctaaatataaaaatatacc 18606022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 10713931 - 10713855
Alignment:
Q  169 aaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||| ||||||| |||||||||||||| ||||||||||| |||||||| |||||||| | ||||||||||||||||    
T  10713931 aaaataatttcacctaaaattaaacttggggtagccaaatgtatattataaggggtagtttaatataaaaatatacc 10713855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 33538360 - 33538437
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||  ||| ||||||  |||| |||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  33538360 aaaaattatgacacctaaaatcgaactcgaggtaaccaaatatatattattaggagtagctaaacataaaaatatacc 33538437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 30932146 - 30932216
Alignment:
Q  175 atttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||||| |||||| ||||||| | |||||||| ||||||||||||||  |||| ||||||||||||||||    
T  30932146 atttcacctaaaatcaaacttgggatagccaaacatatattattagggacagcttaatataaaaatatacc 30932216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 2811357 - 2811316
Alignment:
Q  64 attgttattatttattatttatctcttttgggtgttaatctt 105  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  2811357 attgttattatttattatttatctcttttgggtgttattctt 2811316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 1233785 - 1233837
Alignment:
Q  193 cttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||| ||||||  ||||| ||||||| |||||||||||||||||| |||||||    
T  1233785 cttggggtagctcaatatttattatttggggtagctaaatataaatatatacc 1233837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 62 - 245
Target Start/End: Complemental strand, 10619980 - 10619797
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||| |||| ||||||||||||||    
T  10619980 atattgttattatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagtacgactggaagttaaataaa 10619881  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||| |||||||||||||  |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  10619880 gatagaaaaaattatttcatctaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacc 10619797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 62 - 245
Target Start/End: Complemental strand, 15757593 - 15757410
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||||||| |||||||||||||||    
T  15757593 atattgttattatttattatttatctcttttgggtgttaatctttcgattcttatacaacattatcaaataatttgaagttcgatcggaagttaaataaa 15757494  T
Q  162 gatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||| ||| |||||||||  |||||||||||||| |||||  |||||||||||||||||||||| ||||||||||||||||||    
T  15757493 gatagaaaatattatttcatctaaaattaaacttggggtagttaaatatatattattaggggtagataaatataaaaatatacc 15757410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 70 - 245
Target Start/End: Complemental strand, 7493576 - 7493401
Alignment:
Q  70 attatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagtaa 169  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||||||||||| || ||||||||||||||||||||| ||| ||||||||||| | ||    
T  7493576 attatttattatttatctcttttgggtgttagtcttccggttcctatacgacatgattaaataatttgaagttcgaccgaaagctaaataaagatggaaa 7493477  T
Q  170 aaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  7493476 aaattatttcacttaaaataaaacttggggtagccaaatatatattattggaggtagctaaatataaaaatatacc 7493401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 44429776 - 44429889
Alignment:
Q  132 aatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaa 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  44429776 aatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaatttggggtagccaaataaatattattaggggtagctaaa 44429875  T
Q  232 tataaaaatatacc 245  Q
    ||||||||||||||    
T  44429876 tataaaaatatacc 44429889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 48770542 - 48770403
Alignment:
Q  71 ttatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagtaaa 170  Q
    ||||||||||||||||| |||||||||||| ||||| |||||||||||||||| || |||||||||||||||||||| |||  | ||||||||||| |||    
T  48770542 ttatttattatttatctattttgggtgttattctttcggttcctatacgacatgattaaataatttgaagttcgacc-gaaactgaataaagatagaaaa 48770444  T
Q  171 aattatttcacttaaaattaaacttgaggtagccaaatata 211  Q
    |||||||||||||||||| ||||||| |||||| |||||||    
T  48770443 aattatttcacttaaaataaaacttggggtagctaaatata 48770403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 213
Target Start/End: Original strand, 33409802 - 33409948
Alignment:
Q  68 ttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagt 167  Q
    |||||||||||||||||||| |||||| |||||||||| |||||||||||||| |  || |||| ||||||||||||| |||||| ||||||| ||| |     
T  33409802 ttattatttattatttatcttttttggatgttaatcttctggttcctatacgataagattaaatcatttgaagttcgatcggaagctaaataaggatggg 33409901  T
Q  168 aaaaa-ttatttcacttaaaattaaacttgaggtagccaaatatata 213  Q
    ||||| ||||||| | |||||| ||||||  |||||  |||||||||    
T  33409902 aaaaagttatttcccgtaaaataaaacttagggtagttaaatatata 33409948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 44592668 - 44592591
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||| ||| |||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  44592668 aaaaattattacacctaaaatcaaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 44592591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 36156955 - 36157030
Alignment:
Q  170 aaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||| ||| ||||||| |||||| |||||||||||||||||||||||||||||||||  |||||||||||||    
T  36156955 aaattattacacctaaaattgaacttggggtagccaaatatatattattaggggtagctaagcataaaaatatacc 36157030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 27773634 - 27773557
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||| ||| ||||||  |||||| ||||| |||||||||||||||||||||||||||| |||||||||||||    
T  27773634 aaaaattattacacctaaaatcgaacttggggtaggcaaatatatattattaggggtagctaaacataaaaatatacc 27773557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 39618458 - 39618513
Alignment:
Q  190 aaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39618458 aaacttggggtagccaaatatatattattaggggtagcttaatataaaaatatacc 39618513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 43411018 - 43410941
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||| ||  |||||| ||||||  |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  43411018 aaaaattattacatctaaaatcaaacttagggtaaccaaatatatattattagggatagctaaatataaaaatatacc 43410941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 29681158 - 29681092
Alignment:
Q  169 aaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatata 235  Q
    ||||||||||||  |||||| ||||||| |||||||||||||||||||| ||||||||||| |||||    
T  29681158 aaaattatttcaactaaaatcaaacttggggtagccaaatatatattatcaggggtagctatatata 29681092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 50303961 - 50304011
Alignment:
Q  195 tgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  50303961 tgagatagccaaatatatattattaggggtagctaaacataaaaatatacc 50304011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 6764567 - 6764491
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatac 244  Q
    |||||||||| ||  |||||||||| ||| | ||||||||||||||||||||| ||||||| |||| ||||||||||    
T  6764567 aaaaattattccatctaaaattaaatttgggatagccaaatatatattattagcggtagcttaatacaaaaatatac 6764491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 43022630 - 43022554
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatac 244  Q
    |||||||||| ||  ||||||  |||||  ||||||||||||||||||||||||||||| |||| ||||||||||||    
T  43022630 aaaaattattacatctaaaatcgaactttgggtagccaaatatatattattaggggtagttaaacataaaaatatac 43022554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 50099656 - 50099609
Alignment:
Q  198 ggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||    
T  50099656 ggtagtcaaatatatattattaggggtagctaaacataaaaatatacc 50099609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 48366676 - 48366742
Alignment:
Q  169 aaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatata 235  Q
    ||||||||||||  |||||| ||||||  | |||||||||||||||||| ||||||||||| |||||    
T  48366676 aaaattatttcaactaaaatcaaacttaggatagccaaatatatattatcaggggtagctatatata 48366742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 26633053 - 26633000
Alignment:
Q  191 aacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||||||||| |||||||||||||||||  |||| ||||| |||||||||||||    
T  26633053 aacttgaggtaaccaaatatatattatta-aggtaactaaacataaaaatatacc 26633000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 62 - 245
Target Start/End: Original strand, 5382553 - 5382740
Alignment:
Q  62 atattgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5382553 atattgttattatttattatttatctcttttgggtgttaatctttcggttcttatacgacattatcaaataatttgaagttcgaccggaagttaaataaa 5382652  T
Q  162 gatagtaaaaattatttcac-ttaaaattaaactt-gaggtagccaa--atatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||| |||||||||||||| ||||||||||| || | |||||| ||  |||||||||||||||||||||||||||||||||||||||    
T  5382653 gatagaaaaaattatttcactttaaaattaaatttgggggtagctaaatatatatattattaggggtagctaaatataaaaatatacc 5382740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 64 - 242
Target Start/End: Complemental strand, 10585285 - 10585107
Alignment:
Q  64 attgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaaga 163  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||| || ||||||||||||||||||||| ||| ||||||||||    
T  10585285 attgttattatttattatttatctcttttgggtgttattcttccggttcctatacgacatgattaaataatttgaagttcgaccgaaagctaaataaaga 10585186  T
Q  164 tagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatat 242  Q
    | | || |||||||||||||||||| ||| ||| | |||| ||||||||||||||||||||||||||| ||||||||||    
T  10585185 tggaaagaattatttcacttaaaataaaatttgggatagctaaatatatattattaggggtagctaaaaataaaaatat 10585107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 64 - 245
Target Start/End: Original strand, 36314444 - 36314626
Alignment:
Q  64 attgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaaga 163  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||| ||  |||||||| ||||| ||||||||||||||||||||    
T  36314444 attgttattatttattatttatctcttttggatgttattctttcggatcctatacgacatgattgaataatttaaagtttgaccggaagttaaataaaga 36314543  T
Q  164 tagtaaaaattatttcacttaaaattaaactt-gaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    | | ||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||||||||    
T  36314544 tggaaaaaattatttcatttaaaataaaacttgggggtagccaaatatatattattaggggtaactaaatataaaaatatacc 36314626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 64 - 245
Target Start/End: Original strand, 1592961 - 1593142
Alignment:
Q  64 attgttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaaga 163  Q
    |||||||||||||||||||||||||||||||||  || |||||  | |||| |||||||| ||  |||||||| ||||| ||||||||||||||||||||    
T  1592961 attgttattatttattatttatctcttttgggttctattctttcagatcctgtacgacatgattgaataatttaaagtttgaccggaagttaaataaaga 1593060  T
Q  164 tagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    | | ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  1593061 tggaaaaaattatttcatttaaaataaaacttggggtagccaaatatatattattaggggtaactaaatataaaaatatacc 1593142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 75 - 211
Target Start/End: Complemental strand, 7494895 - 7494759
Alignment:
Q  75 ttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagtaaaaatt 174  Q
    ||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7494895 ttattctttttctcttttgggtgttaatctttcggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagaaaaaatt 7494796  T
Q  175 atttcacttaaaattaaacttgaggtagccaaatata 211  Q
    |||||||||||||||||| ||| |||||| |||||||    
T  7494795 atttcacttaaaattaaatttggggtagctaaatata 7494759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 1043292 - 1043405
Alignment:
Q  132 aatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaa 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  1043292 aatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttggggtagccaaataaatattattaggggtagctaaa 1043391  T
Q  232 tataaaaatatacc 245  Q
    ||||||||||||||    
T  1043392 tataaaaatatacc 1043405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 9190281 - 9190394
Alignment:
Q  132 aatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaa 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  9190281 aatttgaagttcgaccggaagttaaataaagatagtaaaaattatttcacttaaaattaaacttggggtagccaaataaatattattaggggtagctaaa 9190380  T
Q  232 tataaaaatatacc 245  Q
    ||||||||||||||    
T  9190381 tataaaaatatacc 9190394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 69 - 189
Target Start/End: Original strand, 22333390 - 22333510
Alignment:
Q  69 tattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagta 168  Q
    ||||| |||||||||||||| ||||||||||||||||  | ||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||||| | |    
T  22333390 tattacttattatttatctcctttgggtgttaatcttccgattcctttacaacattatcaaataatttgaagtttgaccggaagctaaataaagatggaa 22333489  T
Q  169 aaaattatttcacttaaaatt 189  Q
    ||||||||||||| |||||||    
T  22333490 aaaattatttcacataaaatt 22333510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 75 - 242
Target Start/End: Complemental strand, 10412838 - 10412674
Alignment:
Q  75 ttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagat-agtaaaaat 173  Q
    ||||||||||||||||||||||||||||||| | |||||||||| |||| |    |||||||||||||| |||  |||||||||||| || |  ||||||    
T  10412838 ttattatttatctcttttgggtgttaatcttctagttcctatacaacatgac---ataatttgaagttcaaccaaaagttaaataaacatgaaaaaaaat 10412742  T
Q  174 tatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatat 242  Q
    || |||||||||||| ||| ||| |||||| |||| ||||||||||| | |||||||||||||||||||    
T  10412741 tagttcacttaaaataaaatttg-ggtagctaaatgtatattattagagatagctaaatataaaaatat 10412674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 12563719 - 12563847
Alignment:
Q  75 ttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagatagtaaaaatt 174  Q
    |||||||||||||||||||| ||||||||||    |||| ||||||||| || || |||||||||||||||||||||| |||||||  ||   |||||||    
T  12563719 ttattatttatctcttttggatgttaatcttccaattcccatacgacatgattaagtaatttgaagttcgaccggaagctaaataagaatgaaaaaaatt 12563818  T
Q  175 atttcacttaaaattaaacttgaggtagc 203  Q
    |||||||||||||| |||| || ||||||    
T  12563819 atttcacttaaaataaaacctggggtagc 12563847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 2096183 - 2096106
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||  ||| ||||||  |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  2096183 aaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattaggggtagctaaacataaaaatatacc 2096106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 41732611 - 41732688
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||||||  ||||||  |||||| |||||||||||||||||||||||||||||||| ||||||||| |||||    
T  41732611 aaaaattatttcaactaaaatctaacttggggtagccaaatatatattattaggggtagctacatataaaaacatacc 41732688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 14160588 - 14160643
Alignment:
Q  190 aaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||||| ||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  14160588 aaacttggggtagccaactatatattattaggggtagctaagtatacaaatatacc 14160643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 21278693 - 21278626
Alignment:
Q  168 aaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatata 235  Q
    |||||||||||||  |||||| ||||||| ||||| |||||| ||||||||||||||||| |||||||    
T  21278693 aaaaattatttcaactaaaatcaaacttggggtagtcaaataaatattattaggggtagccaaatata 21278626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 21613392 - 21613439
Alignment:
Q  198 ggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||    
T  21613392 ggtagccaaatatatattattaggggtagccaaatataataatatacc 21613439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 245
Target Start/End: Original strand, 19590798 - 19590976
Alignment:
Q  68 ttattatttattatttatctcttttgggtgttaatcttttggttcctatacgacattatcaaataatttgaagttcgaccggaagttaaataaagat-ag 166  Q
    ||||||||||| ||||| || ||||  |||||| || | |||||||||||| |||  ||||||||||| ||| | |||||| ||  ||||||| ||| |     
T  19590798 ttattatttatcatttaactgttttaagtgttattcctctggttcctatacaacaaaatcaaataattcgaaatacgaccgaaaactaaataaggatgaa 19590897  T
Q  167 taaaaattatttcacttaaaattaaacttgaggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
     ||| |||||| |||||||||| ||||||| ||||    ||| |||||||||| |||||  |||||||||| |||||||    
T  19590898 aaaagattattccacttaaaataaaacttggggtacatgaatgtatattattaagggtaagtaaatataaatatatacc 19590976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 9754090 - 9754043
Alignment:
Q  198 ggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||||||    
T  9754090 ggtagccaattatatattattaacggtagctaaatataaaaatatacc 9754043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 14950635 - 14950682
Alignment:
Q  198 ggtagccaaatatatattattaggggtagctaaatataaaaatatacc 245  Q
    ||||||||| ||| ||||||||||||||||||| |||| |||||||||    
T  14950635 ggtagccaactatgtattattaggggtagctaagtatacaaatatacc 14950682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University