View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8824_high_14 (Length: 219)
Name: NF8824_high_14
Description: NF8824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8824_high_14 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: scaffold0066 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 18740 - 18536
Alignment:
| Q |
1 |
atattatcataattgatattccagcataatctagacgccnnnnnnncaggctaaagcgtttggagtggcaggcaagaagatgggaaactgaactgcaaag |
100 |
Q |
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| T |
18740 |
atattatcataattgatattccggcataatctagacgccaaaaaaacaggccaaatcgtttggagtggcaagcaagaagatgggaaactgaactgcaaag |
18641 |
T |
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| Q |
101 |
taagcaacacattcctccacctaagaaaatgaaccatggccatcttggaattgtttctgttccatattctctcaccctatcaaaaatggatacttccaaa |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18640 |
taagcagcacattcctccacctaagaaaatgaaccatggccatcttggaattgtttctgttccatattctctcaccctatcaaaaatggatacttccaaa |
18541 |
T |
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| Q |
201 |
atctg |
205 |
Q |
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||||| |
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| T |
18540 |
atctg |
18536 |
T |
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