View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8824_high_2 (Length: 440)
Name: NF8824_high_2
Description: NF8824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8824_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 429
Target Start/End: Original strand, 45934801 - 45935232
Alignment:
| Q |
11 |
acaactcgttttctttgctctacattaatttttgcaagttttaccccactgtctaactatct-caggnnnnnnnnatcgtaggtattcacactttcttgg |
109 |
Q |
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| T |
45934801 |
acaactcgttttctttgctctacattaatttttgcaagttttactccactgtctaactatcttcaggttttttttatcgtaggtattcgcactttcttgg |
45934900 |
T |
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| Q |
110 |
gcagtcttggttatagtccttatcgtcttaaaggtatgtgattttgtatatgcaaaaccattcctatttgcctaaattaaaacataataaaatacaaa-- |
207 |
Q |
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| T |
45934901 |
gcagtcttggttatagtccttatcgtcttaaaggtatgtgattttgtatatgcaaaaccattcctatttgcctaaattaaaacataataaaatacaaatt |
45935000 |
T |
|
| Q |
208 |
----------ttttagtcataaaacatttcttttcaatcaagctagacgagctttagtatagacaattgtagctgttgcatagtcaaacttatagtataa |
297 |
Q |
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| T |
45935001 |
ttagttcaaattttagtcataaaacatttcttttcaatcaagctagacgagctttagtatagacaattgtagctgttgcatagtcaaacttatagtataa |
45935100 |
T |
|
| Q |
298 |
aaaatataatttctgatgtttgcatgaattttcttatgggcatcagatgcttttcatgggtaaacgaagatttggcaccaactttcagctcaagttccgt |
397 |
Q |
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| T |
45935101 |
aaaatataatttctgatgtttgcatgaattttcttatgggcatcagatgctttccatgggtaaacgaagatttggcaccaactttcagctcaagttccgt |
45935200 |
T |
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| Q |
398 |
attctcaaggcacttctgtttcttggcttctt |
429 |
Q |
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| T |
45935201 |
attctcaaggcacttctatttcttggcttctt |
45935232 |
T |
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Back To:
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Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 15817027 - 15817461
Alignment:
| Q |
1 |
ttctggtacaacaactcgttttctttgctctacattaatttttgcaagttttaccccactgtctaactatctcaggnnnnnnnnatcgtaggtattcaca |
100 |
Q |
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|||||||||||||||| |||||||||| ||||| ||||||||||||| ||||||||| | ||||||||| || || ||| ||||||||| || |
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| T |
15817027 |
ttctggtacaacaacttgttttctttgttctaccttaatttttgcaaattttacccctccgtctaactacctttggtttttcttatcataggtattcgca |
15817126 |
T |
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| Q |
101 |
ctttcttgggcagtcttggttatagtccttatcgtcttaaaggtatgtgattttgtatatgcaaaaccattccta-------tttgcctaaattaaaaca |
193 |
Q |
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| T |
15817127 |
ctttcttgggtagttttggttatagtccttatcgtcttaaaggtatgtacttttgtagctcggag--catttctaatgtaattttgcctaaattaaagcc |
15817224 |
T |
|
| Q |
194 |
taataaaatacaaattttagtcataaaacatttcttttcaatcaagctagacgagctttagtatagacaattgtagctgttgcatagtcaaacttatagt |
293 |
Q |
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| T |
15817225 |
taataacatacaaattttattcaaaaaacatttcttttcgatcaagcaagacgagcattagattagaccatagtagaggttgcatagttaaaattacagt |
15817324 |
T |
|
| Q |
294 |
ataaa-aaatataatttctgatgtttgcatgaattttcttatgggcatcagatgcttttcatgggtaaacgaagatttggcaccaactttcagctcaagt |
392 |
Q |
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|| || |||| |||||||||||||||| ||||| |||| |||||| |||||||| ||| |||||||| |||||||||||| ||| |||||||||||| || |
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| T |
15817325 |
atgaataaatctaatttctgatgtttggatgaactttcatatgggtatcagatggtttccatgggtagacgaagatttggtaccgactttcagctcatgt |
15817424 |
T |
|
| Q |
393 |
tccgtattctcaaggcacttctgtttcttggcttctt |
429 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| |
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| T |
15817425 |
tccgtattctcaaggcacttctgtttctcggcttctt |
15817461 |
T |
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