View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8824_high_9 (Length: 249)

Name: NF8824_high_9
Description: NF8824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8824_high_9
NF8824_high_9
[»] chr3 (21 HSPs)
chr3 (90-249)||(22894688-22894849)
chr3 (67-249)||(34749898-34750081)
chr3 (67-249)||(43999997-44000180)
chr3 (68-249)||(36749414-36749596)
chr3 (67-249)||(51339784-51339964)
chr3 (67-249)||(36370338-36370521)
chr3 (67-249)||(21559569-21559752)
chr3 (67-246)||(48200696-48200876)
chr3 (67-249)||(46111944-46112127)
chr3 (67-245)||(30735496-30735674)
chr3 (67-249)||(38231301-38231483)
chr3 (95-249)||(20856182-20856334)
chr3 (163-249)||(29460668-29460756)
chr3 (163-249)||(29471520-29471608)
chr3 (145-249)||(39072350-39072456)
chr3 (67-242)||(39467102-39467277)
chr3 (155-249)||(50966139-50966234)
chr3 (155-249)||(51069274-51069369)
chr3 (67-167)||(29472901-29472999)
chr3 (125-235)||(53638157-53638269)
chr3 (166-241)||(29820397-29820474)
[»] chr5 (18 HSPs)
chr5 (67-249)||(13347136-13347319)
chr5 (67-249)||(2237284-2237467)
chr5 (67-249)||(39370935-39371118)
chr5 (67-246)||(14831555-14831735)
chr5 (83-249)||(9408054-9408222)
chr5 (67-249)||(40887942-40888125)
chr5 (67-249)||(1815620-1815799)
chr5 (81-249)||(27553387-27553556)
chr5 (67-220)||(31800595-31800748)
chr5 (67-188)||(42683670-42683790)
chr5 (155-249)||(33404523-33404619)
chr5 (117-249)||(17225327-17225459)
chr5 (67-249)||(19596068-19596250)
chr5 (67-248)||(41003851-41004031)
chr5 (89-249)||(4300565-4300726)
chr5 (80-249)||(12164259-12164433)
chr5 (128-209)||(19124532-19124612)
chr5 (165-202)||(37505927-37505964)
[»] chr4 (14 HSPs)
chr4 (67-249)||(3672282-3672465)
chr4 (67-249)||(28093096-28093279)
chr4 (67-249)||(6112638-6112820)
chr4 (67-249)||(7217773-7217956)
chr4 (67-249)||(21390956-21391138)
chr4 (67-249)||(49243823-49244005)
chr4 (67-249)||(44275714-44275896)
chr4 (67-249)||(46192367-46192550)
chr4 (68-249)||(35544920-35545102)
chr4 (67-249)||(45829258-45829440)
chr4 (67-241)||(51038779-51038955)
chr4 (128-249)||(54849796-54849919)
chr4 (81-249)||(52191214-52191383)
chr4 (23-65)||(3445684-3445726)
[»] scaffold0062 (1 HSPs)
scaffold0062 (67-249)||(6726-6909)
[»] chr7 (24 HSPs)
chr7 (67-249)||(26972203-26972386)
chr7 (67-249)||(36346565-36346747)
chr7 (67-249)||(34108434-34108617)
chr7 (67-249)||(28307495-28307678)
chr7 (67-249)||(7699883-7700066)
chr7 (67-249)||(7700081-7700264)
chr7 (67-249)||(7700279-7700462)
chr7 (67-249)||(7700477-7700660)
chr7 (68-249)||(30887708-30887890)
chr7 (67-249)||(45782660-45782843)
chr7 (67-249)||(31148298-31148480)
chr7 (67-249)||(34828074-34828255)
chr7 (67-249)||(42220964-42221146)
chr7 (67-249)||(5811164-5811346)
chr7 (67-249)||(13108156-13108337)
chr7 (68-249)||(21807324-21807505)
chr7 (123-249)||(23980139-23980267)
chr7 (115-249)||(15020290-15020423)
chr7 (67-165)||(29953572-29953669)
chr7 (67-236)||(36957450-36957618)
chr7 (62-208)||(46475075-46475220)
chr7 (166-249)||(38321017-38321102)
chr7 (130-222)||(20086690-20086784)
chr7 (164-247)||(42950109-42950184)
[»] chr1 (9 HSPs)
chr1 (68-249)||(39249864-39250046)
chr1 (67-249)||(2509032-2509215)
chr1 (67-249)||(34307138-34307321)
chr1 (67-249)||(46901735-46901918)
chr1 (68-249)||(19258674-19258855)
chr1 (67-249)||(28647361-28647543)
chr1 (176-249)||(10146974-10147049)
chr1 (136-239)||(9642933-9643039)
chr1 (136-249)||(29099825-29099939)
[»] chr8 (13 HSPs)
chr8 (67-249)||(42162606-42162789)
chr8 (81-249)||(44081788-44081958)
chr8 (67-249)||(31318813-31318996)
chr8 (67-249)||(10203672-10203855)
chr8 (81-249)||(30432347-30432516)
chr8 (67-249)||(12665352-12665536)
chr8 (67-249)||(43186035-43186217)
chr8 (57-249)||(36189224-36189415)
chr8 (67-245)||(18184565-18184743)
chr8 (67-249)||(33726019-33726202)
chr8 (124-237)||(42668838-42668952)
chr8 (168-241)||(31547-31622)
chr8 (65-214)||(38845021-38845168)
[»] chr2 (11 HSPs)
chr2 (67-249)||(33732577-33732759)
chr2 (67-249)||(44958121-44958304)
chr2 (67-249)||(16089830-16090011)
chr2 (69-249)||(3830900-3831078)
chr2 (89-249)||(14573003-14573165)
chr2 (67-230)||(37498863-37499029)
chr2 (62-249)||(36315569-36315757)
chr2 (67-249)||(37914237-37914419)
chr2 (67-249)||(6376239-6376416)
chr2 (125-249)||(24137149-24137279)
chr2 (130-249)||(41188777-41188898)
[»] chr6 (6 HSPs)
chr6 (67-249)||(3986906-3987088)
chr6 (62-249)||(15345655-15345840)
chr6 (67-245)||(3118047-3118226)
chr6 (67-249)||(14022942-14023124)
chr6 (67-249)||(13697577-13697758)
chr6 (67-249)||(24208452-24208634)
[»] scaffold0043 (1 HSPs)
scaffold0043 (67-249)||(87163-87346)


Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 90 - 249
Target Start/End: Complemental strand, 22894849 - 22894688
Alignment:
Q  90 ttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgattttg 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22894849 ttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgtttttg 22894750  T
Q  190 ccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  22894749 ccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 22894688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 34749898 - 34750081
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    |||||||||||  |||||| | |||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  34749898 gaaaaagatagc-cagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 34749996  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaa--atgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  34749997 catctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 34750081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 44000180 - 43999997
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||  |||||||||||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  44000180 gaaaaagataggt-agacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcacccttttt 44000082  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| |||||||||||||||||||||  ||||||||||||| |||||||| |||||||||||||||||||||    
T  44000081 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtat 43999997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 68 - 249
Target Start/End: Complemental strand, 36749596 - 36749414
Alignment:
Q  68 aaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 167  Q
    |||||||||||| ||||||  |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  36749596 aaaaagataggt-agacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttc 36749498  T
Q  168 atctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    |||||||||||||||| |||||||||||||||||||||  ||||||||||||| |||||||| || ||||||||||||||||||    
T  36749497 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacatctaaggtggttcatgtat 36749414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 51339784 - 51339964
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||||||  |||||| |||| ||||||| ||||||| ||||||||||||||| |||||||    
T  51339784 gaaaaagataggt-agacaccctttttcatacacctcttatgtacaca-tcatgtgttagaggtattttagtaattttacatcatatcatcacccttttt 51339881  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  51339882 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgggtgtaaaaggatgtatgccacctaaggtggtttatgtat 51339964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 36370338 - 36370521
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||| ||  |||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  36370338 gaaaaagataggt-agatactctttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 36370436  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| ||||| ||| |||||||||  ||||||||||||||| |||||||| |||||||||||||||||||||    
T  36370437 catctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtat 36370521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 21559752 - 21559569
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||| | ||||||| |||||||||||| |||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||| | |||||||    
T  21559752 gaaaaagatagat-agacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattacccttttt 21559654  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||    
T  21559653 catctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggtttatgtat 21559569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 67 - 246
Target Start/End: Complemental strand, 48200876 - 48200696
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||| | |||||||||||||| |||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  48200876 gaaaaagataggt-agacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatccttttt 48200778  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaa--atgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 246  Q
    ||||||||||||||||  ||||||||||||||||||  || ||||| ||||||| ||||||||||||||||| || ||||||    
T  48200777 catctcttctttcaatatttttgccacgtgtcacaaatatatgtggatgtaaaaaggtgtatgccacctaagatgattcatg 48200696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 46111944 - 46112127
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||| |||||||||||| | |||| |||| || |||||||||||||||||| ||||||| ||||||||||||||| |||||||    
T  46111944 gaaaaagataggt-agacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcacccttttt 46112042  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| ||||||||| |||||||||  ||||||| ||||||| |||||||| |||||||| ||||||||||||    
T  46112043 catctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaagatggttcatgtat 46112127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 67 - 245
Target Start/End: Original strand, 30735496 - 30735674
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttg-agtaattatacatcatatcatcatcctttt 165  Q
    ||||||||||||| ||||||| ||||||||||||  ||||||||||| | ||||| ||||||||||||  |||||||  |||||||||||||| ||||||    
T  30735496 gaaaaagataggt-agacaccctttttcatacaccacttatgtacactc-catgtgttaggggtatttttagtaatttaacatcatatcatcaccctttt 30735593  T
Q  166 tcatctcttctttcaatgattttgccacgtgtcacaaatgtg--tgggtgtaaaagggtgtatgccacctaaggtggttcat 245  Q
    | || ||||||||||||| ||||||||||||||||| |||||  ||||||||||||||||||||||| ||||||||||||||    
T  30735594 t-atatcttctttcaatgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcat 30735674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 38231483 - 38231301
Alignment:
Q  67 gaaaaagataggtcagaca-ccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttt 165  Q
    ||||||||||||| ||||| |||||||| |||||| |||||||||||||| ||||| | ||||||| || ||| |||  |||| | || || | || |||    
T  38231483 gaaaaagataggt-agacatccttttttgatacacctcttatgtacaccc-catgtgtcaggggtagtttagtcatttcacattacattatta-ccattt 38231387  T
Q  166 tcatctcttctttcaatgattttgccacgtgtcacaaatgtgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    |||| ||||||||||||| ||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  38231386 tcatatcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 38231301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 95 - 249
Target Start/End: Original strand, 20856182 - 20856334
Alignment:
Q  95 atacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgattttgccacg 194  Q
    |||||| ||| |||||||||| ||||| | |||||||||| ||||||| || |||| ||||||||||||||| || |||| |||||||| |||||||||     
T  20856182 atacacctctcatgtacaccc-catgtgtcaggggtattt-agtaattttatatcacatcatcatccttttt-atatctt-tttcaatgtttttgccaca 20856277  T
Q  195 tgtcacaaatgtgt--gggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  20856278 tgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 163 - 249
Target Start/End: Complemental strand, 29460756 - 29460668
Alignment:
Q  163 ttttcatctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||||||| ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  29460756 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 29460668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 163 - 249
Target Start/End: Complemental strand, 29471608 - 29471520
Alignment:
Q  163 ttttcatctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||||||| ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  29471608 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 29471520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 39072350 - 39072456
Alignment:
Q  145 acatcatatcatcatcctttttcatctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggtt 242  Q
    |||||| ||||||| || |||||||||||||||| |||| || |||||| |||||||||||  |||||||||||||||||||||| || |||||||| ||    
T  39072350 acatcacatcatcacccattttcatctcttcttttaatgtttatgccacatgtcacaaatgtatgtgggtgtaaaagggtgtatgtcatctaaggtgatt 39072449  T
Q  243 catgtat 249  Q
    |||||||    
T  39072450 catgtat 39072456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 242
Target Start/End: Original strand, 39467102 - 39467277
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| | ||||| ||||| |||||| ||  ||||||||| |||||| ||| || ||||| |||||||  | |||| ||| ||| || ||||    
T  39467102 gaaaaagataggt-acacacccttttttatacacctcccatgtacacc-tcatgtgttatggatattttagtaatttcatatcacatcctcacccctttt 39467199  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaa--atgtgtgggtgtaaaagggtgtatgccacctaaggtggtt 242  Q
    ||||||||||||||||  ||||| ||| ||||||||  ||||||||||||||||||||||||| || ||| |||||||    
T  39467200 catctcttctttcaatatttttggcacatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcatctatggtggtt 39467277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 50966234 - 50966139
Alignment:
Q  155 atcatcctttttcatctcttctttcaatgattttgccacgtgtcacaaatgtg--tgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||||||||||||||  ||||| |||||||||||||||||  | | ||||||||||||||||||||||||| | ||||||||||    
T  50966234 atcatcctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatgccacctaagat-gttcatgtat 50966139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 51069369 - 51069274
Alignment:
Q  155 atcatcctttttcatctcttctttcaatgattttgccacgtgtcacaaatgtg--tgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||||||||||||||  ||||| |||||||||||||||||  | | ||||||||||||||||||||||||| | ||||||||||    
T  51069369 atcatcctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatgccacctaagat-gttcatgtat 51069274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 167
Target Start/End: Complemental strand, 29472999 - 29472901
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||| | ||||||||||||  |||||| |||||| ||||| |||||||||||| ||||||| |||||||||||||||||| ||||    
T  29472999 gaaaaagataggt-agacatcctttttcatacaccacttatgcacaccc-catgtgttaggggtattttagtaattttacatcatatcatcatccctttt 29472902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 53638269 - 53638157
Alignment:
Q  125 aggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgattttgccacgtgtcacaa--atgtgtgggtgtaaaagggt 222  Q
    |||||||||| || |||| ||||||| ||||||| ||  | |||||||||||||| ||| |||| |||| |||||| |   ||||||||||| |||||||    
T  53638269 aggggtattttagcaattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggt 53638170  T
Q  223 gtatgccacctaa 235  Q
    |||||||||||||    
T  53638169 gtatgccacctaa 53638157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 29820397 - 29820474
Alignment:
Q  166 tcatctcttctttcaatgattttgccacgtgtcacaaatgt--gtgggtgtaaaagggtgtatgccacctaaggtggt 241  Q
    ||||||||||||| |||| |||||| || | |||||| |||  |||||||| |||| |||||||||||||||||||||    
T  29820397 tcatctcttcttttaatgtttttgctacatctcacaattgtatgtgggtgtcaaagtgtgtatgccacctaaggtggt 29820474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 13347319 - 13347136
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  13347319 gaaaaagataggt-agacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactcttttt 13347221  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||| ||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  13347220 catctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 13347136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 2237467 - 2237284
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| |||||||    
T  2237467 gaaaaagataggt-agacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcacccttttt 2237369  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaa--atgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||    
T  2237368 catctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtat 2237284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 39371118 - 39370935
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  39371118 gaaaaagataggt-agacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 39371020  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| ||||| |||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  39371019 catctcttctttcaatgtttttggcacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtat 39370935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 67 - 246
Target Start/End: Complemental strand, 14831735 - 14831555
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||||||  | ||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  14831735 gaaaaagataggtaa-acaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcacccttttt 14831637  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 246  Q
    ||||||||||||||||| ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  14831636 catctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 14831555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 9408054 - 9408222
Alignment:
Q  83 acaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaat 182  Q
    ||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  9408054 acaccatttttcatacacttcttatgtacacccccatatattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaat 9408153  T
Q  183 gattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    | |||||||||||||||||||  |||||| ||||||||||| ||||| ||||| |||||||||||||||    
T  9408154 gtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggcgtatgtcacctgaggtggttcatgtat 9408222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 40887942 - 40888125
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||||||| ||| |||||| ||||||| ||||||| |||||||||||| || |||||||    
T  40887942 gaaaaagataggt-agacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccacccttttt 40888040  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| |||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||| ||||||    
T  40888041 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtatgccacctaaggtggtttatgtat 40888125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 1815620 - 1815799
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||||||||||||| |      ||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| || ||||    
T  1815620 gaaaaagataggt-agacaccttttttcataaagaa---atgtacaccct-atgtgttaggggtattttagtaattttacatcatatcatcacccctttt 1815714  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaa--atgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||| |||||||||||||||| |||||||| ||||||||||||    
T  1815715 catctcttctttcaatgtttttgccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacctaagatggttcatgtat 1815799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 81 - 249
Target Start/End: Original strand, 27553387 - 27553556
Alignment:
Q  81 agacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttca 180  Q
    ||||||| |||||||||||| ||||||||||||||| |||| ||||| |||||| ||||||| ||||||| || |||| | |||||| ||||||||||||    
T  27553387 agacaccctttttcatacacctcttatgtacaccct-atgtgttaggagtattttagtaattttacatcagataatcaccatttttcttctcttctttca 27553485  T
Q  181 atgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||| |||||||||||||||||||  ||||||||||||||| ||| ||||||||||||  ||||||||||||    
T  27553486 atgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaatggtatatgccacctaaaatggttcatgtat 27553556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 67 - 220
Target Start/End: Complemental strand, 31800748 - 31800595
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    |||||||||||| |||||||| |||||||||||| |||| ||||||||| ||| | |||||||||||| ||||||| ||||||||||||||| || ||||    
T  31800748 gaaaaagatagg-cagacaccctttttcatacacctcttgtgtacaccc-catatgttaggggtattttagtaattttacatcatatcatcacccctttt 31800651  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagg 220  Q
    ||||| ||||||||||  ||||||||||||||| |||  |||||||||||||||||    
T  31800650 catcttttctttcaatatttttgccacgtgtcataaatgtgtgtgggtgtaaaagg 31800595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 67 - 188
Target Start/End: Complemental strand, 42683790 - 42683670
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||| | ||||| | |||||||||||| |||||||||||||| ||| |||||||||||||| ||||||| |||||||||||| ||||||||||    
T  42683790 gaaaaagatagat-agacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatccttttt 42683692  T
Q  167 catctcttctttcaatgatttt 188  Q
    ||||||||||||||||| ||||    
T  42683691 catctcttctttcaatgttttt 42683670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 33404523 - 33404619
Alignment:
Q  155 atcatcctttttcatctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||| ||||||| |||||||||||||||||||||    
T  33404523 atcattctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtat 33404619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 249
Target Start/End: Complemental strand, 17225459 - 17225327
Alignment:
Q  117 catgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgt 214  Q
    ||||||| |||||||||| |||||||  |||||| ||||||| |  ||||||||||||||||||||| ||||| ||| |||||||||||  |||||||||    
T  17225459 catgtatcaggggtattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgt 17225360  T
Q  215 aaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||  | ||||||||||||| |||||||||||||    
T  17225359 aaaa--gagtatgccacctaaagtggttcatgtat 17225327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 19596068 - 19596250
Alignment:
Q  67 gaaaaagataggtcagaca-ccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttt 165  Q
    ||||||||||||| ||||| |||||||| | | || |||||||||||||| ||||| | ||||||| || ||| |||  |||| | || |||| |  |||    
T  19596068 gaaaaagataggt-agacatccttttttgaaatacctcttatgtacaccc-catgtgtcaggggtagtttagtcatttcacattacattatca-ctattt 19596164  T
Q  166 tcatctcttctttcaatgattttgccacgtgtcacaaatgtg--tgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||| |||||||||||||| ||||||||| |||||||||||||  ||| ||||||| ||||||||||||||||||||||||||||||    
T  19596165 tcacctcttctttcaatgtttttgccacatgtcacaaatgtgcgtggatgtaaaaaggtgtatgccacctaaggtggttcatgtat 19596250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 248
Target Start/End: Original strand, 41003851 - 41004031
Alignment:
Q  67 gaaaaagataggtcagacaccttttt-tcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttt 165  Q
    |||||||||||  |||| |||||||| | |||||| ||| |||||||||| ||| | | |||| ||||| ||||||| ||||||| |||||||||| |||    
T  41003851 gaaaaagataga-cagaaacctttttgttatacacctctcatgtacaccc-catatgtcagggatattt-agtaattttacatcacatcatcatcccttt 41003947  T
Q  166 tcatctcttctttcaatgattttgccacgtgtcacaaatgtgt--gggtgtaaaagggtgtatgccacctaaggtggttcatgta 248  Q
    | || |||| |||||||  ||||||||| ||||| ||||||||  | ||||||||||||||||||||||||| ||||||||||||    
T  41003948 ttatatctt-tttcaatatttttgccacatgtcataaatgtgtatgagtgtaaaagggtgtatgccacctaaagtggttcatgta 41004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 249
Target Start/End: Original strand, 4300565 - 4300726
Alignment:
Q  89 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgatttt 188  Q
    ||||| |||||  ||| ||||||||| |||||| |||||| ||||| | |||||  |||||| |||| || | ||||| ||||||| |||||||| ||||    
T  4300565 ttttttatacatctctcatgtacacc-tcatgtgttagggatattttaataatttcacatcacatcaccaccattttttatctcttatttcaatgttttt 4300663  T
Q  189 gccacgtgtcacaaat--gtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||  ||||||||||  |||||||||||||||| | |||| |||||||  ||||||||||||    
T  4300664 gccatatgtcacaaatatgtgtgggtgtaaaaggatatatgtcacctaaaatggttcatgtat 4300726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 12164433 - 12164259
Alignment:
Q  80 cagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctct---tct 176  Q
    |||||||| ||||| || ||| |||||||||||||  ||||||  ||||| |||| |||||||  |||||| | ||||| ||| |  |||||||   |||    
T  12164433 cagacacccttttttatgcacctcttatgtacacctccatgtagcaggggcattttagtaatttcacatcacaccatcaccctctcccatctcttcttct 12164334  T
Q  177 ttcaatgattttgccacgtgtcacaaatgtgtgggtgta--aaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||| ||||||||| || ||||| |||||| | |||  ||||  ||| ||||||||||| ||||||||||||    
T  12164333 ttcaatgtttttgccacatgccacaactgtgtgtgagtattaaagaatgtgtgccacctaagatggttcatgtat 12164259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 19124532 - 19124612
Alignment:
Q  128 ggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgattttgccacgtgtcacaaatgtgtg 209  Q
    ||||||| ||||||| |||||||||||||||   | ||||||||||||||| |||| |||||||||  ||||||| ||||||    
T  19124532 ggtattttagtaattttacatcatatcatcacattctttcatctcttcttt-aatgtttttgccacacgtcacaattgtgtg 19124612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 37505964 - 37505927
Alignment:
Q  165 ttcatctcttctttcaatgattttgccacgtgtcacaa 202  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  37505964 ttcatatcttctttcaatgattttgccacatgtcacaa 37505927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 3672465 - 3672282
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3672465 gaaaaagataggt-agataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcacccttttt 3672367  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| |||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||    
T  3672366 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtat 3672282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 28093096 - 28093279
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| |||||||    
T  28093096 gaaaaagataggt-agacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcacccttttt 28093194  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||| ||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  28093195 catctctcctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 28093279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 6112820 - 6112638
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6112820 gaaaaagataggt-agacactctttttcatacacttcttatgtacactc-catgtattaggggtatttgagtaattttacatcatatcatcatccttttt 6112723  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaa--atgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  6112722 catctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtat 6112638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 7217956 - 7217773
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| | ||||| |||||||||||| |||||||||||||||||||| |||  ||||||| ||||||| ||||||||||||||| |||||||    
T  7217956 gaaaaagataggtaa-acaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcacccttttt 7217858  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatgtgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
     ||||||| ||| |||| |||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||| ||||||    
T  7217857 tatctcttattttaatgtttttgccacgtgtcacaaatgtgtgtaggtgttaaagggtgtatgccacctaaggtggtttatgtat 7217773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 21390956 - 21391138
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||| |||||||||||| | ||||||||||| |||||| |||||||||||| ||||||| ||||||||||  |||  | ||||    
T  21390956 gaaaaagataggt-agacaccctttttcatacaccttttatgtacacc-tcatgtgttaggggtattttagtaattttacatcatatattcactcatttt 21391053  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||  |||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||    
T  21391054 catctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtat 21391138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 49244005 - 49243823
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    |||||||||| || ||||| | |||||||||||| |||||||||||| | |||||||||||||||||| ||||||| |||||||||||||||   |||||    
T  49244005 gaaaaagatatgt-agacatcctttttcatacacctcttatgtacactc-catgtattaggggtattttagtaattttacatcatatcatcacttttttt 49243908  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
     |||||||||||||||| ||||||||| |||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||    
T  49243907 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtat 49243823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 44275896 - 44275714
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||| | ||||||| |||||||||||| |||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  44275896 gaaaaagatagat-agacaccctttttcatacacctcttatgtacaccc-catgtgttaggggtattttagtaattttacatcatatcatcacccttttt 44275799  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
     |||||||||||||||  ||||| |||||||||||||||  |||| |||||||| ||| ||||||||||||||||||| ||||||    
T  44275798 aatctcttctttcaatatttttggcacgtgtcacaaatgtgtgtgagtgtaaaatggtatatgccacctaaggtggtttatgtat 44275714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 46192550 - 46192367
Alignment:
Q  67 gaaaaagataggtcagacacc-ttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttt 165  Q
    ||||||||||||| ||||||| |||||| |||||| |||||||||||||| ||||||  |||||||||| | | |||  |||||| || |||| || |||    
T  46192550 gaaaaagataggt-agacacccttttttgatacacctcttatgtacaccc-catgtaccaggggtattttaatcatttcacatcacattatcaccccttt 46192453  T
Q  166 tcatctcttctttcaatgattttgccacgtgtcacaaatgtgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    | |||||||||||||||| ||||||||| |||||||||||||||  |||||||||||||||||||||||||||||| |||||||||    
T  46192452 ttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtgattcatgtat 46192367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 68 - 249
Target Start/End: Complemental strand, 35545102 - 35544920
Alignment:
Q  68 aaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttg-agtaattatacatcatatcatcatccttttt 166  Q
    |||||||||||| ||||||| ||||||||||||  ||||||||||| | ||||| ||||||||||||  ||||||| ||||||||||||||| || ||||    
T  35545102 aaaaagataggt-agacaccctttttcatacaccacttatgtacactc-catgtgttaggggtatttttagtaattttacatcatatcatcacccctttt 35545005  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
     || ||||||||||||| ||||||||||| |||||||||  ||||| ||||||| ||||||| ||||||||| ||||||||||||    
T  35545004 tatatcttctttcaatgtttttgccacgtatcacaaatgtatgtggatgtaaaatggtgtataccacctaagatggttcatgtat 35544920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 45829258 - 45829440
Alignment:
Q  67 gaaaaagataggtcagacacc-ttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttt 165  Q
    ||||||||||||| ||||||| |||||| |||||| | |||||||||||| ||| |   |||||||||| | | |||  |||||| || |||| || |||    
T  45829258 gaaaaagataggt-agacacccttttttgatacacct-ttatgtacaccc-catatgccaggggtattttaatcatttcacatcacattatcaccccttt 45829354  T
Q  166 tcatctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    | |||||||||||||||| ||||||||| |||||||||  ||||||||||||||| |||||||| ||||||| |||||||||||||    
T  45829355 ttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgtcacctaaagtggttcatgtat 45829440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 241
Target Start/End: Complemental strand, 51038955 - 51038779
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcct-ttt 165  Q
    |||||||||||| |||||||||||||||||  || ||| ||||||||||  ||||   || | ||||| |||||||  |||||| | ||||| ||  |||    
T  51038955 gaaaaagatagg-cagacaccttttttcatgtacatctcatgtacacccctatgtggcagagatattttagtaatttcacatcacaccatcacccccttt 51038857  T
Q  166 tcatctcttctttcaatgattttgccacgtgtcacaa--atgtgtgggtgtaaaagggtgtatgccacctaaggtggt 241  Q
    |||||||||||||||||| ||||| ||| ||||||||   ||||||||||| ||||  ||||||||||||||||||||    
T  51038856 tcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtgggtgtcaaagtttgtatgccacctaaggtggt 51038779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 249
Target Start/End: Complemental strand, 54849919 - 54849796
Alignment:
Q  128 ggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgattttgccacgtgtcacaaat--gtgtgggtgtaaaagggtgta 225  Q
    ||||||| | |||||  |||||| ||||||||||| | |||||||||||||||||  ||||| ||| |||||||| |  |||||||| | |||| |||||    
T  54849919 ggtattttaataatttcacatcacatcatcatcctctctcatctcttctttcaatatttttgtcacttgtcacaactgcgtgtgggtatcaaagtgtgta 54849820  T
Q  226 tgccacctaaggtggttcatgtat 249  Q
     || | ||||||||||||||||||    
T  54849819 cgctatctaaggtggttcatgtat 54849796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 249
Target Start/End: Original strand, 52191214 - 52191383
Alignment:
Q  81 agacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttca 180  Q
    ||||||| ||||| |||||| |||  ||||||||| ||| | ||||| |||||| |||||||   ||||| |||||||||   | | |||  ||||||||    
T  52191214 agacacccttttttatacacctctcgtgtacaccc-catatgttaggagtattttagtaatttcgcatcacatcatcatctcctcttatcctttctttca 52191312  T
Q  181 atgattttgccacgtgtcacaaat--gtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||| ||||| ||| |||||||| |  |||||| ||| ||| ||| |||||||||||||||||| |||||||    
T  52191313 atgtttttgtcacatgtcacaattctgtgtggctgttaaaaggtatatgccacctaaggtggtccatgtat 52191383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 3445684 - 3445726
Alignment:
Q  23 tactctttgattagaatgcttaattccttttattatttttata 65  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  3445684 tactcattgattagaatgcttaattccttttattaattttata 3445726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 6909 - 6726
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||||    
T  6909 gaaaaagataggt-agataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcacccttttt 6811  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  6810 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 6726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 26972203 - 26972386
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  26972203 gaaaaagataggt-agacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 26972301  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||| ||||||||| ||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  26972302 catctctcctttcaatgtttttgccacgtgtcataaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 26972386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 36346565 - 36346747
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  36346565 gaaaaagataggt-agacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatca-ccttttt 36346662  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatgtg--tgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||    
T  36346663 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtctgggtgtaaaagggtgtatgccacctaagatggtttatgtat 36346747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 34108617 - 34108434
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| | ||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  34108617 gaaaaagataggtaa-acaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 34108519  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaa--atgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||| ||||||| ||||| ||  ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||    
T  34108518 catctcttcattcaatgtttttgtcatatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtat 34108434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 28307495 - 28307678
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||| |||||||||||||| |||||||||||||| ||| | ||| |||||||| ||||||| ||||||||||||||| |||||||    
T  28307495 gaaaaagataggt-agacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcacccttttt 28307593  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| |||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||| ||||||    
T  28307594 catctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtagtttatgtat 28307678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 7699883 - 7700066
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| | ||||| |||||||||||| |||||| |||||| |||||| ||| |||||||| ||||||| || ||||||||||||||||||||    
T  7699883 gaaaaagataggtaa-acaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7699981  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
     |||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||| ||||||    
T  7699982 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtat 7700066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 7700081 - 7700264
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| | ||||| |||||||||||| |||||| |||||| |||||| ||| |||||||| ||||||| || ||||||||||||||||||||    
T  7700081 gaaaaagataggtaa-acaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700179  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
     |||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||| ||||||    
T  7700180 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtat 7700264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 7700279 - 7700462
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| | ||||| |||||||||||| |||||| |||||| |||||| ||| |||||||| ||||||| || ||||||||||||||||||||    
T  7700279 gaaaaagataggtaa-acaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700377  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
     |||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||| ||||||    
T  7700378 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtat 7700462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 7700477 - 7700660
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| | ||||| |||||||||||| |||||| |||||| |||||| ||| |||||||| ||||||| || ||||||||||||||||||||    
T  7700477 gaaaaagataggtaa-acaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700575  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
     |||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||| ||||||    
T  7700576 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtat 7700660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 68 - 249
Target Start/End: Complemental strand, 30887890 - 30887708
Alignment:
Q  68 aaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 167  Q
    ||||||||| || ||||||| ||||||||||||||||||| ||||||| |||||||||| ||||||| ||||||| ||||||||||||||| ||||||||    
T  30887890 aaaaagatacgtaagacaccctttttcatacacttcttatatacaccc-catgtattagaggtatttaagtaattttacatcatatcatcaccctttttc 30887792  T
Q  168 atctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    |||||||| ||||||| |||||| ||||||||||||||  |||||||||||||| |||||||||||||||| | ||||||||||    
T  30887791 atctcttcattcaatgtttttgctacgtgtcacaaatgtatgtgggtgtaaaagtgtgtatgccacctaagattgttcatgtat 30887708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 45782660 - 45782843
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||| ||||| |||||||| |||||||||| | ||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  45782660 gaaaaagataggt-agacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 45782758  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| ||||| |||||||||||||  ||||||||||||||| | |||||||||||||| |||||| ||||||    
T  45782759 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaatgatgtatgccacctaaagtggttgatgtat 45782843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 31148480 - 31148298
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||  |||||||||||| ||||||  |||||| ||| | |||||  ||||| ||||||| ||||||||||||||| || ||||    
T  31148480 gaaaaagataggt-agacactctttttcatacacctcttatacacaccc-catatgttaggcttattttagtaattttacatcatatcatcacccatttt 31148383  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| |||||||| ||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  31148382 catctcttctttcaatgtttttgccatgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtat 31148298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 34828255 - 34828074
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||| | ||||||||||||  |||||| |||||| ||| | |||||||||||| ||||||| |||||||||||||||||  ||||    
T  34828255 gaaaaagataggt-agacatcctttttcatacaccacttatgcacaccc-catatgttaggggtattttagtaattttacatcatatcatcatcactttt 34828158  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| |||||||||||||||||||||  ||||| ||||||||| |||||| |||| ||||||||||||||||    
T  34828157 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaggatgtatg-cacccaaggtggttcatgtat 34828074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 42220964 - 42221146
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttg-agtaattatacatcatatcatcatcctttt 165  Q
    ||||||||||||| |||||||||||| |||||||  ||||||||||| | ||||| ||||||||||||  |||||||  |||||||||||||| || |||    
T  42220964 gaaaaagataggt-agacaccttttt-catacaccacttatgtacactc-catgtgttaggggtatttttagtaatttaacatcatatcatcaccccttt 42221060  T
Q  166 tcatctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    | || ||||||||||||| |||||||||||||||||||  |||||||||||||||  |||||||||||||||||||||||||||||    
T  42221061 ttatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgccacctaaggtggttcatgtat 42221146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 5811164 - 5811346
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||| ||||| |||||| ||  ||||||||| |||||| |||||||||||| |||||||  |||||| ||| ||| || ||||    
T  5811164 gaaaaagataggt-agacacccttttttatacacctcccatgtacacc-tcatgtgttaggggtattttagtaatttcacatcacatcctcacccctttt 5811261  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| ||||||||| |||||||||  |||||||||| |||||| ||||||||||||| ||||||| ||||||    
T  5811262 catctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgaaaaaggatgtatgccacctatggtggtttatgtat 5811346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 13108337 - 13108156
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||| ||||| |||||| | | ||||||||| |||||| |||||||||||| |||||||  |||||| ||| ||| || |||     
T  13108337 gaaaaagataggt-agacacccttttttatacacctttcatgtacacc-tcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt- 13108241  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatgtgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||| | ||||||||| |||||||||||||||  |||||||||||||||||||| |||||||||||| ||||||    
T  13108240 catctcttctttcaacgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcctaaggtggtttatgtat 13108156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 68 - 249
Target Start/End: Original strand, 21807324 - 21807505
Alignment:
Q  68 aaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 167  Q
    ||||||||||||  |||| | ||||| |||||||||| || ||||||| || || |||||||||||| |||||||  |||| | |||||||||| |||||    
T  21807324 aaaaagataggtt-gacaaccttttttatacacttctcatatacaccc-cacgtgttaggggtattttagtaatttcacataacatcatcatccattttc 21807421  T
Q  168 atctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    |||||||||||||||  ||||||||| | |||||||  ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  21807422 atctcttctttcaatatttttgccacatatcacaaatttgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtat 21807505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 249
Target Start/End: Complemental strand, 23980267 - 23980139
Alignment:
Q  123 ttaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagg 220  Q
    |||| ||||||| |||||||  |||||| ||| ||| || ||||||||||||||||||||| ||||||||| |||||||||||  |||||||||||||||    
T  23980267 ttagaggtattttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagg 23980168  T
Q  221 gtgtatgccacctaaggtggttcatgtat 249  Q
    |||||||||||||| ||||||| ||||||    
T  23980167 gtgtatgccacctatggtggtttatgtat 23980139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 15020423 - 15020290
Alignment:
Q  115 ctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgattttgccacgtgtcacaaatgtgtgggtgt 214  Q
    ||||||| |||||| ||||| |||||||  |||||||||| ||| || ||| | ||||||||||||||| ||||||||  ||||||||||||||||||||    
T  15020423 ctcatgtgttagggatattttagtaatttcacatcatatcttcaccccttt-cgtctcttctttcaatgtttttgccatatgtcacaaatgtgtgggtgt 15020325  T
Q  215 aaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    |||||| ||||||||||||| ||||||| ||||||    
T  15020324 aaaaggttgtatgccacctatggtggtttatgtat 15020290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 29953572 - 29953669
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttt 165  Q
    ||||||||||||| ||||||| |||||||||||||||||||||| ||   |||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  29953572 gaaaaagataggt-agacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatcaccctttt 29953669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 236
Target Start/End: Complemental strand, 36957618 - 36957450
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||  ||||| |||||| | | || |||||||  |||| || ||||||||| ||||||| ||||| | || ||||||| ||||    
T  36957618 gaaaaagataggt-agacacaattttttatacacctttcatatacaccc--atgtgttgggggtattttagtaattttacattacattatcatccatttt 36957522  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaa--atgtgtgggtgtaaaagggtgtatgccacctaag 236  Q
    ||||||||||| ||||  ||||| ||||||||||||  |||| ||| |||||||||||||||||||||||||    
T  36957521 catctcttcttacaatatttttgtcacgtgtcacaaatatgtatggatgtaaaagggtgtatgccacctaag 36957450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 208
Target Start/End: Complemental strand, 46475220 - 46475075
Alignment:
Q  62 tatacgaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtatta-ggggtatttgagtaattatacatcatatcatcatc 160  Q
    |||| ||||||||||||| ||||||| ||||| |||||| ||| ||||||| | |||||| ||| ||||||||| |||||||  |||||| ||| ||| |    
T  46475220 tataggaaaaagataggt-agacacccttttttatacacctctcatgtacatc-tcatgtgttatggggtattttagtaatttcacatcacatcgtcacc 46475123  T
Q  161 ctttttcatctcttctttcaatgattttgccacgtgtcacaaatgtgt 208  Q
    | ||||||||||||||||||||| |||||  || ||||||||||||||    
T  46475122 ccttttcatctcttctttcaatgtttttgttacatgtcacaaatgtgt 46475075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 38321102 - 38321017
Alignment:
Q  166 tcatctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    |||| ||||||||||||| ||||||||| |||||||| ||  ||||||||| |||  |||||||||||||||| ||||| ||||||    
T  38321102 tcatatcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgttaaaatgtgtatgccacctaagatggttaatgtat 38321017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 20086690 - 20086784
Alignment:
Q  130 tatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggt 222  Q
    ||||| |||||||  |||||| ||||||| || |||| ||||||||||| |||| ||||||||  |||| ||||||  |||||||||||||||||    
T  20086690 tattttagtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaagggt 20086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 42950109 - 42950184
Alignment:
Q  164 tttcatctcttctttcaatgattttgccacgtgtcacaaatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgt 247  Q
    ||||||||||| ||||||||  |||||||| | ||||||||||||| |        ||||||||||||||||||||||||||||    
T  42950109 tttcatctcttttttcaatgtatttgccacatatcacaaatgtgtgtg--------ggtgtatgccacctaaggtggttcatgt 42950184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 68 - 249
Target Start/End: Original strand, 39249864 - 39250046
Alignment:
Q  68 aaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 167  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||||| |||||| |||||||||||    
T  39249864 aaaaagataggt-agacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttc 39249962  T
Q  168 atctcttctttcaatgattttgccacgtgtcacaaatgtg--tgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||    
T  39249963 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaagatggttcatgtat 39250046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 2509215 - 2509032
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| || |||||||    
T  2509215 gaaaaagataggt-agacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccacccttttt 2509117  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| |||||||||||||||||||||  ||||||||||||||| |||||| |||||||||||||||||||||    
T  2509116 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaggatgtatgtcacctaaggtggttcatgtat 2509032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 34307138 - 34307321
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||| | ||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  34307138 gaaaaagataggt-agacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 34307236  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||| ||||||||||||| |||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||    
T  34307237 catatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtat 34307321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 46901735 - 46901918
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||| | ||||||||||| ||||||||||||||  ||||||| ||| |||||||||||||| ||||||||||||||| |||||||    
T  46901735 gaaaaagataggt-agacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcacccttttt 46901833  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaa--atgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    |||||||||||| |||| ||||||||||||||||||  |||||| ||||||||| |||||||| |||||||||||||||||||||    
T  46901834 catctcttcttttaatgtttttgccacgtgtcacaaatatgtgttggtgtaaaatggtgtatgtcacctaaggtggttcatgtat 46901918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 249
Target Start/End: Original strand, 19258674 - 19258855
Alignment:
Q  68 aaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 167  Q
    |||||||||||| ||||||| ||||| |||||  ||| |||||||||| ||||| |||||  ||||| | |||||  |||||| |||| || || |||||    
T  19258674 aaaaagataggt-agacacccttttttatacatctctcatgtacaccc-catgtgttaggaatattttaataatttcacatcacatcaccaccccttttc 19258771  T
Q  168 atctcttctttcaatgattttgccacgtgtcacaa--atgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||| |||||||| ||||||||| ||||||||  || ||||||||||||| |||||||||||||| || ||||| ||||||    
T  19258772 atctcttttttcaatgtttttgccacatgtcacaaatatatgtgggtgtaaaaaggtgtatgccaccttagatggtttatgtat 19258855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 28647543 - 28647361
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||| ||||| |||||  ||| ||||||| || ||||| |||||  ||||| | |||||  |||||| |||| || || ||||    
T  28647543 gaaaaagataggt-agacacccttttttatacatctctcatgtacatcc-catgtgttaggaatattttaataatttcacatcacatcaccacccctttt 28647446  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaat--gtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||| ||||||||||| ||||||||  | ||||||||  |||||||||||||| | ||||||| |||| |||||||||||||||    
T  28647445 catctattctttcaatgtttttgccaaatatcacaaatatgtgtgggtgtaaaaagatgtatgcaaccttaggtggttcatgtat 28647361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 10147049 - 10146974
Alignment:
Q  176 tttcaatgattttgccacgtgtcacaaatgtgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||| || ||||||||| |||||||| ||||||  || || |||||||||||||||||||||||||| |||||||    
T  10147049 tttcactgtttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaaggtggtccatgtat 10146974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 9642933 - 9643039
Alignment:
Q  136 agtaattatacatcatatcatcatcctttt-tcatctcttctttcaatgattttgccacgtgtcacaa--atgtgtgggtgtaaaagggtgtatgccacc 232  Q
    |||||||  |||||||||||||| ||  || ||||||||||||||| || ||||| || |||||||||  |||||||||||| ||| ||| ||||||| |    
T  9642933 agtaatttcacatcatatcatcacccccttctcatctcttctttcattgtttttgtcatgtgtcacaattatgtgtgggtgttaaaaggtatatgccatc 9643032  T
Q  233 taaggtg 239  Q
    |||||||    
T  9643033 taaggtg 9643039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 249
Target Start/End: Complemental strand, 29099939 - 29099825
Alignment:
Q  136 agtaattatacatcatatcatcatcctttttcatctcttctttcaatgattttgccacgtgtcacaaatgtgtg-ggtgtaaaagggtgtatgccaccta 234  Q
    |||||||  |||||| ||||||| || |||| || |||| |||||||| ||||| ||| ||||||||||||||| ||    |||| |||||||||| |||    
T  29099939 agtaatttcacatcacatcatcaccccttttaatttcttttttcaatgtttttgtcacatgtcacaaatgtgtgtggacgtaaagagtgtatgccatcta 29099840  T
Q  235 aggtggttcatgtat 249  Q
    |||||||| ||||||    
T  29099839 aggtggtttatgtat 29099825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 42162789 - 42162606
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||  |||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  42162789 gaaaaagataggt-agacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 42162691  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatgtg--tgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| ||||| |||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||    
T  42162690 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtttgggtgtaaaagggtgtatgacacctaaggtggttcatgtat 42162606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 81 - 249
Target Start/End: Complemental strand, 44081958 - 44081788
Alignment:
Q  81 agacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttca 180  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||    
T  44081958 agacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctcttctttca 44081859  T
Q  181 atgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||| |||| |||||||| |||||||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  44081858 atgttttttccacgtgttacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtat 44081788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 31318996 - 31318813
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||| | ||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  31318996 gaaaaagataggt-agacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcacccttttt 31318898  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| |||||||||||||||||||||  ||||| ||||||| | | ||||||||||||||||||||||||||    
T  31318897 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaagttatatgccacctaaggtggttcatgtat 31318813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 10203855 - 10203672
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||| |||||||||||  ||||||||||||||||||||||||||| ||||| ||||||| || ||||||||| || |||||||    
T  10203855 gaaaaagataggt-agacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccacccttttt 10203757  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||  ||||| |||||||||||||||  ||||| ||||||||| |||||| |||||||||||||||||||||    
T  10203756 catctcttctttcaatatttttgtcacgtgtcacaaatgtgtgtggatgtaaaaggatgtatgtcacctaaggtggttcatgtat 10203672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 81 - 249
Target Start/End: Complemental strand, 30432516 - 30432347
Alignment:
Q  81 agacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttca 180  Q
    ||||||| |||||||||||| ||||||||||| || ||| ||||| |||||||| ||||||| ||||||||||||||| || ||||||||||||||||||    
T  30432516 agacaccctttttcatacacctcttatgtacatcc-catatattatgggtattttagtaattttacatcatatcatcaccccttttcatctcttctttca 30432418  T
Q  181 atgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||| |||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||||||||||||||    
T  30432417 atgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatgccatctaaggtggttcatgtat 30432347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 12665536 - 12665352
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcc-tttt 165  Q
    ||||||||||||| ||||| | |||||| ||||| ||||||||| |||||||||| |||||||||||| ||||||| ||||||||||||||| || ||||    
T  12665536 gaaaaagataggt-agacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 12665438  T
Q  166 tcatctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    | |||||||||||||||| ||||||||| ||| |||||  |||||| |||||||||||||||||||||||||||||||||||||||    
T  12665437 ttatctcttctttcaatgtttttgccacatgttacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatgtat 12665352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 43186217 - 43186035
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||||||| |||||||||||| |||||||||||| || |||||||||||| | |||||    
T  43186217 gaaaaagataggt-agacatcatttttcatacacttcttatgtacaccct-atgtattaggggcatttgagtaattttatatcatatcatcacctttttt 43186120  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatgtgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||| ||||||||||| ||||||||| | |||||||||||||  |||||||||| || |||||||||||| |||||| ||||||    
T  43186119 catcttttctttcaatgtttttgccacatatcacaaatgtgtgcaggtgtaaaagagtatatgccacctaaagtggttgatgtat 43186035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 57 - 249
Target Start/End: Complemental strand, 36189415 - 36189224
Alignment:
Q  57 atttttatacgaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcat 156  Q
    |||||| || ||||||||||||| ||||||| ||||||||||||  |||||||||||||  ||||  ||||||||||| | ||||| || ||||||||||    
T  36189415 atttttttaggaaaaagataggt-agacaccctttttcatacaccacttatgtacacccatatgt--taggggtattttaataattttatatcatatcat 36189319  T
Q  157 catcctttttcatctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||  | ||||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  36189318 cactccttttcatctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaagatggttcatgtat 36189224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 67 - 245
Target Start/End: Complemental strand, 18184743 - 18184565
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||| | |||||||||||| | ||||||||||| |||||| |||||||||||| ||||||| || |||||||||||| || ||||    
T  18184743 gaaaaagataggt-agacatcctttttcatacaccttttatgtacacc-tcatgtgttaggggtattttagtaattttatatcatatcatcacccctttt 18184646  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaa--atgtgtgggtgtaaaagggtgtatgccacctaaggtggttcat 245  Q
    ||||||||| ||||||| |||  |||||||||||||  |||||||| |||||||||||||||| ||| |||||||||||||    
T  18184645 catctcttcattcaatgttttcaccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacttaaggtggttcat 18184565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 33726202 - 33726019
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcct-ttt 165  Q
    ||||||||||||| ||||||| ||||| |||||| ||  ||||||||  |||||| |||||||||||| |||||||  |||||| ||| ||||||  |||    
T  33726202 gaaaaagataggt-agacacccttttttatacacctcccatgtacact-tcatgtgttaggggtattttagtaatttcacatcacatcgtcatccacttt 33726105  T
Q  166 tcatctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    |||||||||||||||||| ||||||||| |||||||||||  ||||||||||||| |||||||||||||||| |||||| ||||||    
T  33726104 tcatctcttctttcaatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaaagtggtttatgtat 33726019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 42668838 - 42668952
Alignment:
Q  124 taggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgattttgccacgtgtcacaa--atgtgtgggtgtaaaaggg 221  Q
    ||||||||||  |||||||  |||||||| ||||| ||| | |||| |||||||| |||| ||||||||||||||||||   ||||||||||| |||| |    
T  42668838 taggggtattgtagtaatttcacatcataccatca-cctctctcatatcttcttttaatgtttttgccacgtgtcacaattgtgtgtgggtgtcaaagtg 42668936  T
Q  222 tgtatgccacctaagg 237  Q
    ||||||||||||||||    
T  42668937 tgtatgccacctaagg 42668952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 31547 - 31622
Alignment:
Q  168 atctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggt 241  Q
    |||||||||||||||| ||||||||| |||||||| ||  ||||||||| |||| |||||||| ||||||| ||||    
T  31547 atctcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaagatggt 31622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 38845021 - 38845168
Alignment:
Q  65 acgaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttt 164  Q
    ||||||||||||| | | ||||| ||||| ||||||   | ||||||||||| |||| |||||| ||||| |||||||   ||||| ||||||| || |     
T  38845021 acgaaaaagatagataa-acaccattttttatacacccttcatgtacacccttatgtgttagggttattttagtaatttctcatcacatcatcacccctc 38845119  T
Q  165 ttcatctcttctttcaatgattttgccacgtgtcacaaatgtgtgggtgt 214  Q
    || |||| ||||||||||  |||| |||| |||||||| |||||| ||||    
T  38845120 tt-atcttttctttcaatattttttccacatgtcacaattgtgtgtgtgt 38845168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 33732759 - 33732577
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||||||| ||| |||||||||||||| ||||||| |||||||||||| || |||||||    
T  33732759 gaaaaagataggt-agacaccctttttcatacacctcttatgtacaccc-catatattaggggtattttagtaattttacatcatatcaccacccttttt 33732662  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| ||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  33732661 catctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 33732577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 44958304 - 44958121
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||| | |||||||||||| ||||||||| |||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  44958304 gaaaaagataggt-agacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 44958206  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
     |||||||||||||||| ||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  44958205 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 44958121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 16090011 - 16089830
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||||| |||||||||||| || |||||||    
T  16090011 gaaaaagataggt-agacaccttttttcatacacctcttatgtacaccc-catgtgttaggggtattttagtaattttacatcatatcacca-ccttttt 16089915  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatgtgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
     |||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||    
T  16089914 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacttaaggtggttcatgtat 16089830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 69 - 249
Target Start/End: Original strand, 3830900 - 3831078
Alignment:
Q  69 aaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttca 168  Q
    ||||||||||| ||||||| |||||||||||| |||||||||||||| ||||| |||||||||| | ||||||| ||||||| || |||| |  ||||||    
T  3830900 aaaagataggt-agacaccctttttcatacacctcttatgtacaccc-catgtgttaggggtatattagtaattttacatcagataatcaccacttttca 3830997  T
Q  169 tctcttctttcaatgattttgccacgtgtcacaaatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3830998 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtat 3831078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 89 - 249
Target Start/End: Complemental strand, 14573165 - 14573003
Alignment:
Q  89 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgatttt 188  Q
    |||| ||||||| |||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||| |||||| ||||||||||||||||| ||||    
T  14573165 ttttacatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctcttctttcaatgttttt 14573066  T
Q  189 gccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    || ||||||||||||||  ||||| |||||||||||| |||||||||||||||||| ||||||    
T  14573065 gctacgtgtcacaaatgtgtgtggatgtaaaagggtggatgccacctaaggtggtttatgtat 14573003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 67 - 230
Target Start/End: Original strand, 37498863 - 37499029
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatc--cttt 164  Q
    ||||||||||||| ||||||| ||||| |||||| ||||||||||| || ||||| |||||||||||| ||||||| ||||||||||||||| |  ||||    
T  37498863 gaaaaagataggt-agacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccctcttt 37498961  T
Q  165 ttcatctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgcca 230  Q
    ||||||||||||||||||| ||||||||| |||||||||  |||||| |||||||||| |||||||||    
T  37498962 ttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgagtgtaaaaggatgtatgcca 37499029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 62 - 249
Target Start/End: Complemental strand, 36315757 - 36315569
Alignment:
Q  62 tatacgaaaaagataggtcagaca-ccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatc 160  Q
    |||| ||||||||||||| ||||| |||||||| |||||| ||||||||||||| |||||| | |||||||||| | | |||  |||||| || |||| |    
T  36315757 tataggaaaaagataggt-agacatccttttttgatacacctcttatgtacacc-tcatgtgtcaggggtattttaatcatttcacatcacattatcacc 36315660  T
Q  161 ctttttcatctcttctttcaatgattttgccacgtgtcacaaatgtgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
      |||| |||||||||||||||| ||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  36315659 tctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 36315569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 37914237 - 37914419
Alignment:
Q  67 gaaaaagataggtcagacacc-ttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttt 165  Q
    ||||||||||||| ||||||| |||||| |||||| |||||||||||||| ||||||  |||| ||||| | | |||  |||||| || |||| || |||    
T  37914237 gaaaaagataggt-agacacccttttttgatacacctcttatgtacaccc-catgtaccaggg-tattttaatcatttcacatcacattatcaccccttt 37914333  T
Q  166 tcatctcttctttcaatgattttgccacgtgtcacaaatgtgtggg--tgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    | |||||||||||||||| ||||||||| ||||||||||||||| |  ||||||||||||||||||||||||||||||| ||||||    
T  37914334 ttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtat 37914419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 6376239 - 6376416
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||| | ||||| |||||| ||  ||||||| | |||||| |||| ||||||| |||||||  |||||| ||| ||| || ||||    
T  6376239 gaaaaagataggt-agacatccttttttatacacctcccatgtacatc-tcatgtgttagaggtattttagtaatttcacatcacatcctcacccatttt 6376336  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatgtg--tgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    |||||||||||||||||     ||||| |||||||||||||  ||||||||||||||||||||||||||| ||||||| ||||||    
T  6376337 catctcttctttcaatg-----gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtat 6376416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 249
Target Start/End: Original strand, 24137149 - 24137279
Alignment:
Q  125 aggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgattttgccacgtgtcacaaatgtgtg------ggtgtaaaa 218  Q
    |||||||||| |||||||  |||||| ||| |||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||      ||||| |||    
T  24137149 aggggtattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtaggtgtcaaa 24137248  T
Q  219 gggtgtatgccacctaaggtggttcatgtat 249  Q
    |||||||| ||||||||||||||| ||||||    
T  24137249 gggtgtataccacctaaggtggtttatgtat 24137279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 249
Target Start/End: Complemental strand, 41188898 - 41188777
Alignment:
Q  130 tatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgattttgccacgtgtcacaaatgtgtg--ggtgtaaaagggtgtatg 227  Q
    ||||| ||||||| ||||||| |||||||||| ||||||| || | |||||||| ||||||||| ||||| |||| |||   | | ||||||||||||||    
T  41188898 tattttagtaattttacatcacatcatcatcccttttcatatcatttttcaatgtttttgccacatgtcataaatatgtatagatataaaagggtgtatg 41188799  T
Q  228 ccacctaaggtggttcatgtat 249  Q
     ||| ||| |||||||||||||    
T  41188798 tcacataaagtggttcatgtat 41188777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 3986906 - 3987088
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||| | ||||||||||| || ||||||| |||| ||||||||| |||||||||||||||| |||||||||| ||||||| ||||    
T  3986906 gaaaaagataggt-agacatcatttttcatacatttattatgtataccc-catgtattaagggtatttgagtaattttacatcatattatcatccctttt 3987003  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  3987004 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 3987088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 62 - 249
Target Start/End: Original strand, 15345655 - 15345840
Alignment:
Q  62 tatacgaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcc 161  Q
    |||| |||||| |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||  | |||||||||||| |     
T  15345655 tataggaaaaaaataggt-agacatcttttttcatacacttcttatgtacaccct-atgtattaggggcatttgagtaatttgatatcatatcatcacct 15345752  T
Q  162 tttttcatctcttctttcaatgattttgccacgtgtcacaaatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    |||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| ||||||    
T  15345753 tttttcatcttttctttcaatgtttttgccacgtgtcacaaatgtatgggtgtaaaagagtatatgccacctaaggtggttgatgtat 15345840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 67 - 245
Target Start/End: Original strand, 3118047 - 3118226
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||| | |||||||||||  |||||||||||| | |||||||||||||||||| ||||||| |||||||| ||| || |||||||    
T  3118047 gaaaaagataggt-agacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccacccttttt 3118145  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcat 245  Q
     |||| ||||||||||| |||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||    
T  3118146 tatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcat 3118226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 14023124 - 14022942
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||||| ||||| |||||| ||  ||||||||| |||||| |||||||||||| |||||||  |||||| ||| ||| || || |    
T  14023124 gaaaaagataggt-agacacccttttttatacacctcccatgtacacc-tcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgt 14023027  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| ||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||    
T  14023026 catctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggtttatgtat 14022942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 13697758 - 13697577
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||| | | ||||||||||| | ||||||||||||| ||||| |||| | ||||| ||||||| || |||||||||||| || ||||    
T  13697758 gaaaaagataggt-agagatcatttttcatacattacttatgtacaccc-catgtgttagagatattttagtaattttatatcatatcatcacccgtttt 13697661  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatgtgt-gggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| |||| |||||| ||||||||||||  |||||||||||||| ||| || ||||| ||||| ||||||    
T  13697660 catctcttctttcaatgtttttaccacgtatcacaaatgtgtatggtgtaaaagggtgcatgtcatctaagatggtttatgtat 13697577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 24208634 - 24208452
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 166  Q
    ||||||||||||| ||||| | ||||| |||||| ||| || |||||| |||||| |||||||||||| |||||||  |||||| ||| ||| |||||||    
T  24208634 gaaaaagataggt-agacatccttttttatacacctctcatttacacc-tcatgtgttaggggtattttagtaatttcacatcacatcctcacccttttt 24208537  T
Q  167 catctcttctttcaatgattttgccacgtgtcacaaatg--tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||| ||||||||| | |||||||||  |||||||||||||  |||||| ||||||| | ||||| ||||||    
T  24208536 catctcttctttcaatgtttttgccacatatcacaaatgtgtgtgggtgtaaaatagtgtataccacctatgatggtttatgtat 24208452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 87163 - 87346
Alignment:
Q  67 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatat--catcatccttt 164  Q
    ||||||||||||| |||||||||||||||||||| | |||||||||||| ||||| |||||||||||| ||||||| || || ||||  |||||   |||    
T  87163 gaaaaagataggt-agacaccttttttcatacaccttttatgtacaccc-catgtgttaggggtattttagtaattttatattatatatcatcactattt 87260  T
Q  165 ttcatctcttctttcaatgattttgccacgtgtcacaaatgtgtg-ggtgtaaaagggtgtatgccacctaaggtggttcatgtat 249  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  87261 ttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggtgtacaagggtgtatgccacctaaggtggttcatgtat 87346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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