View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8824_low_1 (Length: 506)
Name: NF8824_low_1
Description: NF8824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8824_low_1 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 6 - 506
Target Start/End: Complemental strand, 11484410 - 11483909
Alignment:
| Q |
6 |
tttggagttggatatgtaggcaaaatttactgaacttcgttagcaaacatcgtgt--tcattannnnnnnacgttttcgtgtctttagtctttgtaccgg |
103 |
Q |
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| T |
11484410 |
tttggagttggatatgtaggcaaaatttactgaactttgttaccaaacatcgtgtgttcattatttttttacgttttcgtgtctttagtctttgtaccgg |
11484311 |
T |
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| Q |
104 |
gttactgttctattagtctggactgat---ttctttcaaatctgaaacaaggttgacaatattaatttgtttttgtagatcctccaatcatccataggat |
200 |
Q |
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| T |
11484310 |
gttactgttctattagtctggactgctggtttctttcaaatctgaaacaaggttgacaatattaatttgtttttgtagatcctccaatcatccataggat |
11484211 |
T |
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| Q |
201 |
atgaaccatatcctggatttcagagaaaggtgcaggcaaggatagatgctaatatcaaagaatggaagaacaagcaacaaaagaaaatttcatagtttga |
300 |
Q |
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| T |
11484210 |
atgaaccatatcctggatttcagagaaaggtgcaggcaaggatagatgctaatatcaaagaatggaagaacaagcaacaaaagaaaatttcatagtttga |
11484111 |
T |
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| Q |
301 |
aaaagttgttacacaagttgttacaaatattgttgttatcgataattcccatcgaaataaagaaaaataatagattgcaggaaactagataagattaatt |
400 |
Q |
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| T |
11484110 |
aaaagttgttacacaagttgttacaaatattgttgttatcgataattcccatcgaaataaagaaaaataatagattgcaggagactagataagattaatt |
11484011 |
T |
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| Q |
401 |
ttgttgaaatattcggggataatgttagaaattgttatgtatctatggatgagattatcaattttttagtgttatcatactta-tctaaaagctaattag |
499 |
Q |
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| T |
11484010 |
ttgttgaa-----cggagataatgttagaaattgttatgtatctgtggatgaaattatcaattttttagtgttatcatacttactctaaaagctaattag |
11483916 |
T |
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| Q |
500 |
gtcaagc |
506 |
Q |
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| T |
11483915 |
gtcaagc |
11483909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 125 - 464
Target Start/End: Complemental strand, 11469789 - 11469465
Alignment:
| Q |
125 |
actgatttctttcaaatctgaaacaaggttgacaatattaatttgtttttgtagatcctccaatcatccataggatatgaaccatatcctggatttcaga |
224 |
Q |
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| T |
11469789 |
actgatttctttcaaaactgat-caaggttgtcaatattaatttgtttt-gtagatcctccaatcatccataggatatgaaccatatcctggatttcaga |
11469692 |
T |
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| Q |
225 |
gaaaggtgcaggcaaggatagatgctaatatcaaagaatggaagaacaagcaacaaaagaaaatttcatagtttgaaaaagttgttacacaagttgttac |
324 |
Q |
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| T |
11469691 |
aaaaagtgcaggcaaggatagatgctaatatcaaagaatggaaggaaaagcaacagaagaaaatttcttagtttg-----------acaaaagttgttac |
11469603 |
T |
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| Q |
325 |
aaatattgttgttatcgataattcccatcgaaataaagaaaaataataga--ttgcaggaaactagataagattaattttgttgaaatattcggggataa |
422 |
Q |
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| T |
11469602 |
aaa---tgttgttatatatcatt-ccattgaaataaagaagaaaaataaaatttacaggagattagataagattaatgttgttgatatatttgggtataa |
11469507 |
T |
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| Q |
423 |
tgttagaaattgttatgtatctatggatgagattatcaattt |
464 |
Q |
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| T |
11469506 |
tgttgaaaaatgttatgtatttgtggatgagattatcaattt |
11469465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 135 - 310
Target Start/End: Complemental strand, 11499587 - 11499413
Alignment:
| Q |
135 |
ttcaaatctgaaacaaggttgacaatattaatttgtttttgtagatcctccaatcatccataggatatgaaccatatcctggatttcagagaaaggtgca |
234 |
Q |
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| T |
11499587 |
ttcaaattggaaacaagattgactattttaatttatttt-gcaggtcctccaatcatccattggatatgaaccatatcctggatttcaaacaaatgtgaa |
11499489 |
T |
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| Q |
235 |
ggcaaggatagatgctaatatcaaagaatggaagaacaagcaacaaaagaaaatttcatagtttgaaaaagttgtt |
310 |
Q |
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| T |
11499488 |
ggcaaggatagaagctaatatcaaagaatggaaggacaagcaacaaaagaaactttcttagcttgaaaaagttgtt |
11499413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 145 - 263
Target Start/End: Complemental strand, 11505874 - 11505757
Alignment:
| Q |
145 |
aaacaaggttgacaatattaatttgtttttgtagatcctccaatcatccataggatatgaaccatatcctggatttcagagaaaggtgcaggcaaggata |
244 |
Q |
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| T |
11505874 |
aaacaaggttgactatcttaatttgtttt-gtaggtcctccaatcatccatcggatatgaaccatatccaggatttcagacaaaggtgaaggcaaggata |
11505776 |
T |
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| Q |
245 |
gatgctaatatcaaagaat |
263 |
Q |
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| T |
11505775 |
gaagccaatatcaaagaat |
11505757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 464
Target Start/End: Complemental strand, 11471304 - 11471255
Alignment:
| Q |
415 |
ggggataatgttagaaattgttatgtatctatggatgagattatcaattt |
464 |
Q |
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| T |
11471304 |
ggggataatgttggaaaatgttatgtatttatggataagattatcaattt |
11471255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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