View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8824_low_10 (Length: 250)
Name: NF8824_low_10
Description: NF8824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8824_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 83 - 222
Target Start/End: Complemental strand, 7623530 - 7623391
Alignment:
| Q |
83 |
aaaaatcttcccagaaaattaaattaaaaatatagtattcacatttttctgaaaatacaaactgctgttttgcatcttcaaggagctagtatgtgttttt |
182 |
Q |
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| T |
7623530 |
aaaaatcttccgagaaaattaaattaaaaatatagtattcacatttttctgaaaatacaaactgctgttttgcatcttcaaggagctagtatgtgttttt |
7623431 |
T |
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| Q |
183 |
agtcatgaacaagttttggttatattgacttgagtataat |
222 |
Q |
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| T |
7623430 |
agtcatgaacaagttttgcttatattgacttgagtataat |
7623391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 7623775 - 7623691
Alignment:
| Q |
1 |
cactatcaatgtcatttatacgagagtcacatcattttgtaacctgaaaattaatactcattcgaattttatataagagaataaa |
85 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
7623775 |
cactatcaatgtcatttatacgagagtcacatcattttgtaacctgaaaattaatactcatttgaattttatctaagagaataaa |
7623691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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