View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8824_low_2 (Length: 449)
Name: NF8824_low_2
Description: NF8824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8824_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 15 - 432
Target Start/End: Complemental strand, 33127831 - 33127411
Alignment:
| Q |
15 |
gacatcaacaccgttgtacgcatgcccctcctcatgattgcatattcttcggtggccttccattgccgcctatggctctagtcgttcttacatgtttcct |
114 |
Q |
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| T |
33127831 |
gacatcaacaccgttgtacgcatgcccctcctcatgattgcatattcttcggtggccttccattgccgcctatggctctagtcgttcttacatgtttcct |
33127732 |
T |
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| Q |
115 |
actcctttggctcttcatcgtttggatccaagcgaacatgttgtcccttaaccctat---ataaaagggcaattctatgactggttttttgtacttcacg |
211 |
Q |
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| T |
33127731 |
actcctttggctcttcatcgtttggatccaagcgaacatgttgtcccttaaccctattatataaaagggcaattttatgactgattttttgtacttcacg |
33127632 |
T |
|
| Q |
212 |
atctggaagattcacttctaggttgttgttgttgatctatttattgcaattcgctactactggtttgtgttttcgttgtgctactgctagcattgggttg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127631 |
atctggaagattcacttctaggttgttgttgttgatctatttattgcaattcgctactactggtttgtgttttcgttgtgctactgctagcattgggttg |
33127532 |
T |
|
| Q |
312 |
ttgttggttcgagttcatcgtgaggtcgcacaccttttttgttatttagttttgcactcgtattacgagttcaatggattgtgctaatgcgttttagttg |
411 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
33127531 |
ttgttggttcgagttcatcgtgaggtcacacaccttttttgttatttggttttgcactcgtattacgagttcgatggattgtgctaatgtgttttagttg |
33127432 |
T |
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| Q |
412 |
cttcgtgtaccaactttgatg |
432 |
Q |
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||||||||||||||||||||| |
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| T |
33127431 |
cttcgtgtaccaactttgatg |
33127411 |
T |
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