View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8824_low_4 (Length: 329)
Name: NF8824_low_4
Description: NF8824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8824_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 30024529 - 30024214
Alignment:
| Q |
14 |
agactattgttaagacttgtagtgaactagtgatgatatttatagattaagctatcaatttttcttgctcttgaatttacccaagtgcaatatacaatcc |
113 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30024529 |
agactattgttaagacttgtagtgaactagtggtgatatttatagattaagctatcaattttgcttgctcttgaatttacccaagtgcaatatacaatcc |
30024430 |
T |
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| Q |
114 |
actaatggtgaacataacaggaatga-----------------agcattacacatatgagttgctcttgcgctgcatagctcttaacaattggattttta |
196 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30024429 |
actaattgtgaacataacaggaatgatgcaaactcttagataaagcattacacatatgagttgctcttgccctgcatagctcttaacaattggattttta |
30024330 |
T |
|
| Q |
197 |
ttccttcttgagtgatcgatcacgaggtagaaacctactatgcgagtcaaaccatgataccttcccaccgaattttaatttaaatgtttttgtgtcttca |
296 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30024329 |
ttccttcttgagtgatcgatcatgaggtagaaacctactatgcgagtcaaaccatgataccttcccaccgaattttaatttaaatgtttttgtgtcttca |
30024230 |
T |
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| Q |
297 |
atgcaagtaggacatg |
312 |
Q |
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|||||||||||||||| |
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| T |
30024229 |
atgcaagtaggacatg |
30024214 |
T |
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