View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8824_low_5 (Length: 315)
Name: NF8824_low_5
Description: NF8824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8824_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 39082255 - 39081971
Alignment:
| Q |
19 |
ctttcgagatattggaggctttgggaaatgatgccgagtccttggttcctagttctaagtaatctgactggtattttttctggctatttacaatttttct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39082255 |
ctttcgagatattggaggctttgggaaatgatgccgagttcttggttcctagttctaagtaatctgactggtattttttctggctatttacaatttttct |
39082156 |
T |
|
| Q |
119 |
ggtctgaaattgtttaggatatgcttgagtgaacaatatttaaggatatgtcactttgctgtttcaattatttggttactacttgtttgtactagtttgt |
218 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39082155 |
ggtctgaaattgtttaggatatgcttgggtgaacaatatttaaggatatgtcactttgctgtttcaattatttggttactacttgtttgtactagtttgt |
39082056 |
T |
|
| Q |
219 |
tccatatttttgtatttaaaagcttctactaaagtaatatgttcgagaacttcgtcccagttacaattcttaatatatctctgct |
303 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
39082055 |
tccatattgttgtatttaaaagcttctactaaagtaatatgttcgagaacttcttcccagttacaattcttaatatatctttgct |
39081971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 39086913 - 39086809
Alignment:
| Q |
101 |
gctatttacaatttttctggtctgaaattgtttaggatatgcttgagtgaacaatatttaaggatatgtcactttgctgtttcaattatttggttactac |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| || |||||||||||||||||||||| |||| |
|
|
| T |
39086913 |
gctatttacattttttctggtctgaaattgtttaggatatgcttgtttgaacaataattaaggatatgttacattgctgtttcaattatttggtttctac |
39086814 |
T |
|
| Q |
201 |
ttgtt |
205 |
Q |
| |
|
||||| |
|
|
| T |
39086813 |
ttgtt |
39086809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 39091295 - 39091233
Alignment:
| Q |
24 |
gagatattggaggctttgggaaatgatgccgagtccttggttcctagttctaagtaatctgac |
86 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||| |
|
|
| T |
39091295 |
gagattttggaggctttgggaaatgatgctgagttcttggttcctagttctaagtaatgtgac |
39091233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 39087904 - 39087853
Alignment:
| Q |
24 |
gagatattggaggctttgggaaatgatgccgagtccttggttcctagttcta |
75 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
39087904 |
gagattttggaggctttgggaaatgatgctgagttcatggttcctagttcta |
39087853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 39070846 - 39070774
Alignment:
| Q |
24 |
gagatattggaggctttgggaaatgatgccgagtccttggttcctagttctaagtaatctgactggtattttt |
96 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||| ||||||||| | ||||||||||| ||||| ||| |||| |
|
|
| T |
39070846 |
gagattttggaggctttggcaaatgatgttgagttcttggttccaatttctaagtaatgtgacttgtaatttt |
39070774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 39090039 - 39089992
Alignment:
| Q |
128 |
ttgtttaggatatgcttgagtgaacaatatttaaggatatgtcacttt |
175 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
39090039 |
ttgtttaagatatgcttaggtgaacaatgtttaaggatatgtcacttt |
39089992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University