View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8824_low_7 (Length: 262)
Name: NF8824_low_7
Description: NF8824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8824_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 210825 - 211075
Alignment:
| Q |
1 |
ctccgcctgcaattcaataagtgataagtgttaacgcttctcacattcagaacaccaattcgcattacaaacaaagaataatgaacttgtatgtggcgtg |
100 |
Q |
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| T |
210825 |
ctccgcctgcaattcaataagtgataagtgttaacgcttctcacattcagaacaccaattcgcattacaaacaaagaataatgaacttgtatgtggcgtg |
210924 |
T |
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| Q |
101 |
acgtgtgagtggttcatgttgcgaaagaacacacgtacactctcaggcttagagtatttgaaactaaataatgagaaagaattaatacaagttttattca |
200 |
Q |
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| T |
210925 |
acgtgtgagtggttcatgttgcggaagaacacatgtacactctcagacttagagtatttgaaactaaataatgagaaagaattaatacaagttttattca |
211024 |
T |
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| Q |
201 |
ctgctaatgcacggcttttgttactaaatacacttggcccgtgttgttcat |
251 |
Q |
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| T |
211025 |
ctgctaatgcacggcttttgttactaaatacacttggcccgtgttgttcat |
211075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 134
Target Start/End: Original strand, 225324 - 225453
Alignment:
| Q |
5 |
gcctgcaattcaataagtgataagtgttaacgcttctcacattcagaacaccaattcgcattacaaacaaagaataatgaacttgtatgtggcgtgacgt |
104 |
Q |
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| T |
225324 |
gcctgcaattcaataagtgataagtgtcaacacttcacacattcagatcaccaattcacattataaacaaagaataatgaactcgtatgtggcgtgacgt |
225423 |
T |
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| Q |
105 |
gtgagtggttcatgttgcgaaagaacacac |
134 |
Q |
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| T |
225424 |
gtgagcggtttatgttgcgaaagaaaacac |
225453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 34122250 - 34122077
Alignment:
| Q |
24 |
ataagtgttaacgcttctcacattcagaacaccaattcgcattacaaacaaagaataatgaacttgtatgtggcgtgacgtgtgagtggttcatgttgcg |
123 |
Q |
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|||||||||||| ||| |||||||||| ||| |||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | |
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| T |
34122250 |
ataagtgttaacaattcacacattcagatcactgattcatgttataaacaaagaataatgaacttgtatgtggcatgacgtgtgagaggttcatgttgtg |
34122151 |
T |
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| Q |
124 |
aaagaacacacgtacactctcaggcttagagtatttgaaactaaataatgagaaagaattaatacaagttttattca |
200 |
Q |
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|||||| | || || |||||| ||||||||||||||| || ||||| ||||||||| ||||||| ||||||||| |
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| T |
34122150 |
aaagaa-aaac--acgctctcacatttagagtatttgaaattagataataagaaagaatgaatacaaattttattca |
34122077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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