View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8825_high_1 (Length: 522)
Name: NF8825_high_1
Description: NF8825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8825_high_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 29525898 - 29525378
Alignment:
| Q |
1 |
ctttggctaatggctatatataaagtcttaggagagaaaattattcattattaattttcatacctcgagtgctaagaatcagataagattaacagcaaga |
100 |
Q |
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| T |
29525898 |
ctttggctaatggctatatataaagtcttaggagagaaaattattcattattaattttcataccttgagtgctaagaatcagataagattaaccgcaaga |
29525799 |
T |
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| Q |
101 |
aatggtaagagtattgattgagggattcatactgattcttaaaggagaatcaatgatggtgctctagatgtgtaaaagctcaattatatatctcagggat |
200 |
Q |
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| T |
29525798 |
aatggtaagagtattgattgagggattcatagtgattcttaaaggagaatcaatgatggtgctctagatgtgtaaaaactcaattatatatctcagggat |
29525699 |
T |
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| Q |
201 |
gtgggaaaacaattatctgaactttgttaacaatctctggtcttatctcttccctctgtttaaatgttccttataattcttattctgtaggaatttatag |
300 |
Q |
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| T |
29525698 |
gtgggaaaacaattatctgaattttgttaacaatctctggtcttatctcttccctctgtttaaatgttccttataattcttgttctgtaggaatttatag |
29525599 |
T |
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| Q |
301 |
ttttcttgtttactgttactgtttataattctttatttccgccaaaaatgtcttttagaactcagaattcgtcatcagacacattgtatttcttgcacat |
400 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29525598 |
ttttcttg-ttactgttactgtttataattctttatttctgccaaaaatgtcttttagaactcagaattcgtcatcagacacattgtatttcttgcacat |
29525500 |
T |
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| Q |
401 |
tctatacggtttctgattttatattaattcatttgttcctcggaatccgaacacattgaaattgttattttatacggtgttgggtgtacagtgttgaaat |
500 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29525499 |
tctatacggtttctgattttatattaattcattttttcctcgtaatccgaacaaattgaaattgttattctatacggtgttgggtgtacagtgttgaaat |
29525400 |
T |
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| Q |
501 |
tgtttccgagttcctgtgatgt |
522 |
Q |
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| T |
29525399 |
tgtttccgagttcctgtgatgt |
29525378 |
T |
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