View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8825_low_1 (Length: 525)
Name: NF8825_low_1
Description: NF8825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8825_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 515
Target Start/End: Original strand, 23447292 - 23447778
Alignment:
| Q |
20 |
caagactgttgcaacaccatggttatgtcatggattaatagttcagtgaacgctgaaattgcctgaagcatgttctagatggatactgttactgaaattc |
119 |
Q |
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| T |
23447292 |
caagactgttgcaacaccatggttatgtcatggattaatagttcagtgaacgctaaaattgactgaagcatgttctagatggatgctgttactgaaattc |
23447391 |
T |
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| Q |
120 |
cccaatgatttggtcactgaactacagagtattccaaaacactgcagccctnnnnnnnnt-----cactggcctacgctnnnnnnntaaagtttattagc |
214 |
Q |
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| T |
23447392 |
cccaatgatttggtcactgaactacagagtattctaaaacactgcagcactaaaaaaaaaaaatacactggcctaggctaaaaaaatagagcttattagc |
23447491 |
T |
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| Q |
215 |
aaacttctaacaa-ggatatggcagacatcttaactatttaccacaacgcaagcttgggattaaactgcatttttgaaaattgtggtcaagttatataca |
313 |
Q |
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| T |
23447492 |
aaacttctaacaaaggatatggcatacattttaactatttaccacaacgtaagcttgggattgaactgcatttttgaaaattgtggtcaagttacataca |
23447591 |
T |
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| Q |
314 |
gagccattgttctgatttttcaaactcaggttggttcaaagttcaaacaggtctcaagctatttatcaaaaatgtaaactactgcactcctaacaaatgg |
413 |
Q |
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| T |
23447592 |
gagccattgttctgatttttcaaactcaggttggttcaaagttcaaacaggtctcaagctatttatcaaaaatgta---------------aacaactga |
23447676 |
T |
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| Q |
414 |
gcaatgaacttttaatgcgtaaatctcttctattaaattcctatcatcatattagaacataaacttaaagaaattgtagaatagaaaaaattttgatgtc |
513 |
Q |
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| T |
23447677 |
gcaatgaacttttaatgcgtaaatctcttctattaaattcctatcataatattagaatataaacttaaagaaattgtagaatagaaacaattttgaagtc |
23447776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 23878275 - 23878242
Alignment:
| Q |
122 |
caatgatttggtcactgaactacagagtattcca |
155 |
Q |
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| T |
23878275 |
caatgatttggtcactgaactgcagagtattcca |
23878242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 23421059 - 23421099
Alignment:
| Q |
122 |
caatgatttggtcactgaactacagagtattccaaaacact |
162 |
Q |
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| T |
23421059 |
caataatttggtcactgaactgcagagtattccataacact |
23421099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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