View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8825_low_12 (Length: 215)

Name: NF8825_low_12
Description: NF8825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8825_low_12
NF8825_low_12
[»] chr7 (4 HSPs)
chr7 (1-142)||(45937963-45938107)
chr7 (151-212)||(45937870-45937931)
chr7 (151-215)||(297103-297167)
chr7 (155-212)||(22582380-22582437)
[»] chr4 (3 HSPs)
chr4 (1-124)||(5715442-5715569)
chr4 (1-86)||(5725721-5725805)
chr4 (151-212)||(5715325-5715386)
[»] chr2 (9 HSPs)
chr2 (1-86)||(29960509-29960596)
chr2 (151-205)||(45485826-45485880)
chr2 (151-212)||(18163965-18164026)
chr2 (151-212)||(21794528-21794589)
chr2 (11-77)||(295921-295986)
chr2 (151-204)||(302420-302473)
chr2 (11-75)||(302558-302622)
chr2 (102-148)||(29960462-29960504)
chr2 (151-212)||(39190688-39190749)
[»] chr3 (5 HSPs)
chr3 (1-86)||(18649491-18649575)
chr3 (151-212)||(531568-531629)
chr3 (151-212)||(4315594-4315655)
chr3 (151-212)||(32813620-32813681)
chr3 (11-77)||(41925130-41925196)
[»] scaffold0038 (1 HSPs)
scaffold0038 (31-121)||(49537-49628)
[»] chr6 (2 HSPs)
chr6 (31-121)||(28249375-28249466)
chr6 (151-212)||(7501407-7501468)
[»] chr5 (4 HSPs)
chr5 (151-212)||(9507665-9507726)
chr5 (151-212)||(34854085-34854146)
chr5 (151-212)||(9503683-9503744)
chr5 (151-212)||(32090238-32090299)
[»] chr8 (2 HSPs)
chr8 (151-213)||(37791193-37791255)
chr8 (151-212)||(11096159-11096220)
[»] chr1 (1 HSPs)
chr1 (151-204)||(44541400-44541453)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 45938107 - 45937963
Alignment:
Q  1 gaacaattcactatgttctatgcacagcggaagtgtttatgaaaaataagttgtttctaagcaagatgaaaataacacaaa---gttgtaaaaactgaag 97  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||   ||||||||||||||||    
T  45938107 gaacaattccctatgttctatgcacagcggaagtgcttatgaaaaataagatgtttctaagcaagatgaaaataacataaagttgttgtaaaaactgaag 45938008  T
Q  98 agagaaaactaatgaatttttattgatcgttgatacttatttaca 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  45938007 agagaaaactaatgaatttttattgatcgttgatacttatttaca 45937963  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 45937931 - 45937870
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattacta 212  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||||||||||    
T  45937931 gtaacaaactcctctaactaactaactaccttggttaacacgctaaccaaggtttattacta 45937870  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 297167 - 297103
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaaac 215  Q
    |||||||||||||||||| |||||| |||||||| ||||||| ||| |||||||| |||||||||    
T  297167 gtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttgttactaaac 297103  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 22582380 - 22582437
Alignment:
Q  155 caaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattacta 212  Q
    |||||||||||||| |||||| |||||||| ||||||| ||| |||||||||||||||    
T  22582380 caaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattacta 22582437  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 5715569 - 5715442
Alignment:
Q  1 gaacaattcactatgttctatgcacagcggaagtgtttatgaaaaataagttgtttctaagcaagatgaaaataacacaaa---gttgtaaaaactgaag 97  Q
    ||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |||||||| |||   ||||||||||||||||    
T  5715569 gaacaattcactatgttctatgcacagtgaaagtgcttatgaaaaataagttgtttctaagcaagatg-aaataacataaagttgttgtaaaaactgaag 5715471  T
Q  98 aga--gaaaactaatgaatttttattgat 124  Q
    |||   |||||||||||||||||||||||    
T  5715470 agaagaaaaactaatgaatttttattgat 5715442  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 5725721 - 5725805
Alignment:
Q  1 gaacaattcactatgttctatgcacagcggaagtgtttatgaaaaataagttgtttctaagcaagatgaaaataacacaaagttgt 86  Q
    |||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||    
T  5725721 gaacaattcactatgttctatgcacagcagaagtgcttataaaaaataagttgtttctaagcaagatg-aaataacataaagttgt 5725805  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 5715386 - 5715325
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattacta 212  Q
    |||||||||||||||||| |||||||||   ||| ||||||| ||| |||||||| ||||||    
T  5715386 gtaacaaactcctctaacaaactaattattctggttaacacgctaaccaaggtttgttacta 5715325  T

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Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 29960596 - 29960509
Alignment:
Q  1 gaacaattcactatgttctatgcacagcggaagtgtttatgaaaaataagttgtttcta--agcaagatgaaaataacacaaagttgt 86  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  |||||||||||||||||| ||||||||    
T  29960596 gaacaattcactatgttctatgcacagcggaagtgcttatgaaaaataagttatttctaagagcaagatgaaaataacaaaaagttgt 29960509  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 45485826 - 45485880
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggttt 205  Q
    |||||||||||||||||| |||||| |||||||| ||||||| ||| ||||||||    
T  45485826 gtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggttt 45485880  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 18164026 - 18163965
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattacta 212  Q
    |||||||||||||||||| |||||| |||||||| ||||||| ||| ||| | |||||||||    
T  18164026 gtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaatggttattacta 18163965  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 21794528 - 21794589
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattacta 212  Q
    |||||||||||||||||| |||||| |||||||| ||||||| ||| || ||||| ||||||    
T  21794528 gtaacaaactcctctaacaaactaactaccttggttaacacgctaaccatggtttgttacta 21794589  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 295986 - 295921
Alignment:
Q  11 ctatgttctatgcacagcggaa-gtgtttatgaaaaataagttgtttctaagcaagatgaaaataaca 77  Q
    |||||||||||||||||||||| ||| ||||  ||||||||||||||   ||||||||||||||||||    
T  295986 ctatgttctatgcacagcggaaagtgcttat--aaaataagttgtttaagagcaagatgaaaataaca 295921  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 302473 - 302420
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtt 204  Q
    |||||||||||||||||| |||||| |||| ||| ||||||| ||| |||||||    
T  302473 gtaacaaactcctctaacaaactaactaccctggttaacacgctaaccaaggtt 302420  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 302622 - 302558
Alignment:
Q  11 ctatgttctatgcacagcggaa-gtgtttatgaaaaataagttgtttctaagcaagatgaaaataa 75  Q
    ||||||||||||| |||||||| ||| |||| ||||||||| ||||| | ||||||||||||||||    
T  302622 ctatgttctatgcgcagcggaaagtgcttat-aaaaataagatgtttatgagcaagatgaaaataa 302558  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 29960504 - 29960462
Alignment:
Q  102 aaaactaatgaatttttattgatcgttgatacttatttacaacacat 148  Q
    |||||||||||||||||||||||||    ||||||||||||||||||    
T  29960504 aaaactaatgaatttttattgatcg----tacttatttacaacacat 29960462  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 39190688 - 39190749
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattacta 212  Q
    |||||||||||||||||| |||||| |||||||| ||||| | ||| ||| |||| ||||||    
T  39190688 gtaacaaactcctctaacaaactaactaccttggttaacatgctaaccaaagtttgttacta 39190749  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 18649491 - 18649575
Alignment:
Q  1 gaacaattcactatgttctatgcacagcggaagtgtttatgaaaaataagttgtttctaagcaagatgaaaataacacaaagttgt 86  Q
    |||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||    
T  18649491 gaacaattcactatgttctatgcacagcagaagtgcttataaaaaataagttgtttctaagcaagatg-aaataacataaagttgt 18649575  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 531568 - 531629
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattacta 212  Q
    |||||||||||||||||  |||||| |||||| | ||||||| ||| |||||||||||||||    
T  531568 gtaacaaactcctctaaaaaactaactacctttgttaacacgctaaccaaggtttattacta 531629  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 4315655 - 4315594
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattacta 212  Q
    |||||||||||||||||| |||||| |||||||| ||||||| ||| ||| |||| ||||||    
T  4315655 gtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaacgtttgttacta 4315594  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 32813681 - 32813620
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattacta 212  Q
    |||||||||||||||||| |||||| |||||| | ||||||| ||| |||||||| ||||||    
T  32813681 gtaacaaactcctctaacaaactaactaccttcgttaacacgctaaccaaggtttgttacta 32813620  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 41925130 - 41925196
Alignment:
Q  11 ctatgttctatgcacagcggaa-gtgtttatgaaaaataagttgtttctaagcaagatgaaaataaca 77  Q
    ||||||||||||| |||||||| ||| |||| |||||||||||||||   ||||||||||||||||||    
T  41925130 ctatgttctatgcgcagcggaaagtgcttat-aaaaataagttgtttaagagcaagatgaaaataaca 41925196  T

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Target: scaffold0038 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 49628 - 49537
Alignment:
Q  31 aagtgtttatgaaaaataagttgtttctaagcaagatgaaaataacacaaagttgta--aaaactgaagagagaaaactaatgaatttttatt 121  Q
    ||||| |||||||||||||| |||||||||||||||||||| ||||| |||||| |   ||||||||||||||||||||||||||||||||||    
T  49628 aagtgcttatgaaaaataagctgtttctaagcaagatgaaa-taacataaagttattgtaaaactgaagagagaaaactaatgaatttttatt 49537  T

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Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 28249466 - 28249375
Alignment:
Q  31 aagtgtttatgaaaaataagttgtttctaagcaagatgaaaataacacaaagttgta--aaaactgaagagagaaaactaatgaatttttatt 121  Q
    ||||| |||||||||||||| |||||||||||||||||||| ||||| |||||| |   ||||||||||||||||||||||||||||||||||    
T  28249466 aagtgcttatgaaaaataagctgtttctaagcaagatgaaa-taacataaagttattgtaaaactgaagagagaaaactaatgaatttttatt 28249375  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 7501407 - 7501468
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattacta 212  Q
    |||||||||||||||||| |||||| || ||||| ||||||| ||| |||||||| ||||||    
T  7501407 gtaacaaactcctctaacaaactaactatcttggttaacacgctaaccaaggtttgttacta 7501468  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 9507726 - 9507665
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattacta 212  Q
    ||||||||||||| |||| |||||| |||||||| ||||||| ||| |||||||||||||||    
T  9507726 gtaacaaactcctttaacaaactaactaccttggttaacacgctaaccaaggtttattacta 9507665  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 34854146 - 34854085
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattacta 212  Q
    |||||||||||||||||| || ||| |||||||| ||||||| ||| ||| |||||||||||    
T  34854146 gtaacaaactcctctaacaaattaactaccttggttaacacgctaaccaaagtttattacta 34854085  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 9503744 - 9503683
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattacta 212  Q
    |||||||||||||||||| |||||| || ||||  ||||||| ||| ||| |||||||||||    
T  9503744 gtaacaaactcctctaacaaactaactatcttgattaacacgctaaccaaagtttattacta 9503683  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 32090299 - 32090238
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattacta 212  Q
    |||||||||||||||||| |||||| ||| |||| ||||||| ||| | |||||| ||||||    
T  32090299 gtaacaaactcctctaacaaactaactacattggttaacacgctaaccgaggtttgttacta 32090238  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 37791193 - 37791255
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattactaa 213  Q
    |||||||||||||||||| |||||| |||||||| ||||| | |||||||||||  |||||||    
T  37791193 gtaacaaactcctctaacaaactaactaccttggttaacatgctaatcaaggttggttactaa 37791255  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 11096220 - 11096159
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtttattacta 212  Q
    |||||||||||||||||| |||||| |||||||  ||||||| ||| ||| |||| ||||||    
T  11096220 gtaacaaactcctctaacaaactaactaccttgattaacacgctaaccaaagtttgttacta 11096159  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 44541400 - 44541453
Alignment:
Q  151 gtaacaaactcctctaactaactaattaccttggctaacacgttaatcaaggtt 204  Q
    |||||||||||||||||| |||||| |||| ||| ||||||  |||||||||||    
T  44541400 gtaacaaactcctctaacaaactaactaccctggttaacacactaatcaaggtt 44541453  T

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