View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8825_low_3 (Length: 449)
Name: NF8825_low_3
Description: NF8825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8825_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 47521230 - 47520798
Alignment:
| Q |
1 |
tttggatttgatatttgttttcagaaaacttcgaaaaaatttcttgtctatacttatcttcatctcttttgtttcatgttctattaactttaccattcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47521230 |
tttggatttgatatttgttttcagaaaacttcaaaaaaatttcttgtctatacttttcttcatctcttttgtttcatgttctattaactttaccattcaa |
47521131 |
T |
|
| Q |
101 |
catttccatttgcatcttattcctctcttgaattcatctttgcagcagtgctatctaccttaacaaacaacacttttataccaatttcaatcaattaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47521130 |
gatttccatttgcatcttattcctctcttgaattcatctttgcagcagtgctatctaccttaacaaacaacacttttataccaatttcaatcaattagca |
47521031 |
T |
|
| Q |
201 |
tccttcaattgccgtttttggaagatgtataagtccaaatattcaccacatcaacaaaccccgctttctctaacaattaaaatcaacaaaattcaatgat |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47521030 |
tccttcaattgccgtttttggaagatgtataagtccaaatattcaccacatcaacaaaccccgctttctctaacaattaaaatcaacaaaactcaatgat |
47520931 |
T |
|
| Q |
301 |
ggtttccgggcaacttcaattacaaaacaccgccttcattttcatcctcaaatctattaaaccatttgactcttccaaggaagaaatatgcagcaggcct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
47520930 |
ggtttccgggcaacttcaattacaaaacaccaccttcattttcatactcaaatctattaaaccatttgacccttccaaggaagaagtatgcagcaggcct |
47520831 |
T |
|
| Q |
401 |
gcattcgatttcatcgccatttaatctcataca |
433 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
47520830 |
gcattcgatttcatcgccatttaatctcataca |
47520798 |
T |
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