View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8825_low_4 (Length: 408)
Name: NF8825_low_4
Description: NF8825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8825_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 14789859 - 14790241
Alignment:
| Q |
18 |
atttataagtacttacctattcttttgcctttcacaggtccaaattattcactttctcatatagaagaatcaattttccacctcaagaatctcaatcatg |
117 |
Q |
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| T |
14789859 |
atttataagtacttacctattcttttgcctttcacaggtccaaattattcactttctcatatagaagaatcaattttccacctcaagaatctcaatcatg |
14789958 |
T |
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| Q |
118 |
gagggtttccaaaaagaaaagcagattatggtggatccactttcattgaaaaattcaccaatcaaacaaatgtataaccaagaaaccactaagttgccaa |
217 |
Q |
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| T |
14789959 |
gagggtttccaaaaagaaaagcagattatggtggatccactttcattgaaaaattcacctatcaaacaaatgtataaccaagaaactacaaagttgccaa |
14790058 |
T |
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| Q |
218 |
ctataatcacaacttcttctaccattttgcaccctccaacattacaacctccaaagctaagatttttaagcttgagtctcccgaattcggtaaactcatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14790059 |
ctataatcacaacttcttctaccattttgcaccctccaacattacaacctccaaagctaagatttttaagcttgagtctcccgaattcggtaaactcatc |
14790158 |
T |
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| Q |
318 |
accccggtttgattcgatcaaaaaatcgaattctgggagcccggaaacagaatgtcaagaatctactaataatgtgaccacca |
400 |
Q |
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| T |
14790159 |
accccggtttgattcgatcaaaaaatcgaattctgggagcctggaaacacaatgtctaaaatctactaataatgtgaccacca |
14790241 |
T |
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