View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8825_low_5 (Length: 407)

Name: NF8825_low_5
Description: NF8825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8825_low_5
NF8825_low_5
[»] chr4 (21 HSPs)
chr4 (17-327)||(4887651-4887941)
chr4 (14-210)||(11910738-11910934)
chr4 (183-328)||(11911009-11911154)
chr4 (183-302)||(12386867-12386985)
chr4 (183-328)||(31982626-31982771)
chr4 (112-159)||(31982474-31982521)
chr4 (106-159)||(52631208-52631261)
chr4 (157-196)||(12387075-12387114)
chr4 (183-230)||(39805978-39806025)
chr4 (106-159)||(19752701-19752754)
chr4 (106-159)||(19787052-19787105)
chr4 (159-210)||(11910961-11911012)
chr4 (109-159)||(11910990-11911040)
chr4 (165-195)||(19752738-19752768)
chr4 (165-195)||(19787038-19787068)
chr4 (113-159)||(31982607-31982653)
chr4 (14-64)||(52631093-52631143)
chr4 (183-221)||(52631299-52631337)
chr4 (159-196)||(12386982-12387019)
chr4 (14-63)||(19752588-19752637)
chr4 (14-63)||(19787169-19787218)
[»] chr8 (14 HSPs)
chr8 (14-196)||(41381638-41381820)
chr8 (183-328)||(9199534-9199679)
chr8 (183-304)||(41381922-41382043)
chr8 (106-159)||(36339946-36339999)
chr8 (277-328)||(17506162-17506213)
chr8 (165-206)||(36339983-36340024)
chr8 (183-231)||(23666590-23666638)
chr8 (184-231)||(37094527-37094574)
chr8 (109-159)||(41381903-41381953)
chr8 (186-232)||(45470138-45470184)
chr8 (14-63)||(36339832-36339881)
chr8 (159-196)||(41381888-41381925)
chr8 (183-219)||(17506057-17506093)
chr8 (183-219)||(23662350-23662386)
[»] chr5 (10 HSPs)
chr5 (183-328)||(35046410-35046554)
chr5 (14-185)||(35046190-35046351)
chr5 (185-231)||(19285076-19285122)
chr5 (106-159)||(32243572-32243625)
chr5 (106-159)||(17131277-17131330)
chr5 (165-195)||(17131314-17131344)
chr5 (262-328)||(27768989-27769055)
chr5 (165-195)||(32243609-32243639)
chr5 (14-63)||(17131162-17131211)
chr5 (14-63)||(32243459-32243508)
[»] scaffold0259 (1 HSPs)
scaffold0259 (189-328)||(15725-15864)
[»] chr2 (7 HSPs)
chr2 (183-328)||(9613581-9613724)
chr2 (184-298)||(40929559-40929673)
chr2 (183-328)||(27407970-27408115)
chr2 (112-159)||(27408219-27408266)
chr2 (183-231)||(20007856-20007904)
chr2 (112-160)||(20007714-20007762)
chr2 (186-230)||(37441328-37441372)
[»] chr1 (10 HSPs)
chr1 (186-327)||(48504001-48504142)
chr1 (339-390)||(34773243-34773294)
chr1 (114-156)||(19027394-19027436)
chr1 (183-230)||(5947776-5947823)
chr1 (183-230)||(10029981-10030028)
chr1 (243-325)||(12156341-12156422)
chr1 (184-230)||(19027492-19027538)
chr1 (109-139)||(19027492-19027522)
chr1 (106-159)||(6161742-6161795)
chr1 (279-328)||(28989666-28989715)
[»] chr7 (19 HSPs)
chr7 (166-328)||(29914529-29914691)
chr7 (189-271)||(2238110-2238192)
chr7 (184-328)||(26246808-26246952)
chr7 (106-159)||(35819271-35819324)
chr7 (112-160)||(37707258-37707306)
chr7 (112-159)||(29914676-29914723)
chr7 (282-328)||(2238073-2238119)
chr7 (183-328)||(21493647-21493792)
chr7 (113-159)||(21493765-21493811)
chr7 (184-230)||(27873882-27873928)
chr7 (243-328)||(27873952-27874037)
chr7 (183-231)||(4896819-4896867)
chr7 (165-195)||(21493795-21493825)
chr7 (113-159)||(26246926-26246972)
chr7 (165-195)||(35819308-35819338)
chr7 (14-63)||(21493912-21493961)
chr7 (14-58)||(4896559-4896603)
chr7 (107-139)||(4896676-4896708)
chr7 (183-231)||(37707409-37707457)
[»] chr6 (2 HSPs)
chr6 (185-328)||(32093311-32093454)
chr6 (183-231)||(31202765-31202813)
[»] scaffold0015 (3 HSPs)
scaffold0015 (106-159)||(63243-63296)
scaffold0015 (165-195)||(63229-63259)
scaffold0015 (14-63)||(63360-63409)
[»] scaffold0002 (2 HSPs)
scaffold0002 (184-231)||(295939-295986)
scaffold0002 (184-231)||(294951-294998)
[»] scaffold0006 (1 HSPs)
scaffold0006 (186-328)||(187573-187715)
[»] chr3 (2 HSPs)
chr3 (183-328)||(4663883-4664028)
chr3 (107-158)||(35085331-35085382)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 4887941 - 4887651
Alignment:
Q  17 tgtgtttgattaattttatttctttatttatatttaaaaagtggaaaatgcattactaacagaatttttcctcggtaatgtgattcttcataaatattac 116  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||    
T  4887941 tgtgtttgattaattttatttctttatttatattaaaaaagtggaaaatgcattactgacataatttttcctcggtaatgtgattctccataaatgttac 4887842  T
Q  117 tggcggaattttccctcagtaatctagaggtggttttgacaaaatgatgaggtagttttgacaaagcattactgagggaa----aattccgtcaataaca 212  Q
    || | ||||||||||||||||                      |||| ||| |||||||||||||||||||| |||||||    ||||| |||| |||||    
T  4887841 tgactgaattttccctcagta----------------------atgaagagatagttttgacaaagcattaccgagggaatgaaaattcagtcagtaaca 4887764  T
Q  213 ttactgacgtcagtattacctaaggacactaatccgccactaatgtgtgttattgagggatatattgcattactgaggatttatttcccccagtaaaaac 312  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4887763 ttactgacgtcagtattactgagggacactaatccgccactaatgtgt--tattgagggatatattgcattactgagggtttatttcccccagtaaaaac 4887666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 11910738 - 11910934
Alignment:
Q  14 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaaatgcattactaacagaatttttcctcggtaatgtgattcttcataaatat 113  Q
    |||||||||| ||||||||| |||||||| || |||   ||||||||||||||||||||| ||| |||||| || | |||||||| |||  |||||||||    
T  11910738 atttgtgtttaattaattttgtttctttaattttatcagaaaagtggaaaatgcattactgacaaaattttcccacagtaatgtggttcgccataaatat 11910837  T
Q  114 tactggcggaattttccctcagtaatctagaggtggttttgacaaaatgatgaggtagttttgacaaagcattactgagggaaaattccgtcaataa 210  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||    
T  11910838 tactggcggaattttccctcagtaatgtagaggtggttttgacaaaatggtgaggtagttttgacaaagcattactgagggaataatccctcaataa 11910934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 183 - 328
Target Start/End: Original strand, 11911009 - 11911154
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacgtcagtattacctaaggacactaatccgccactaatgtgtgttattgagggatatattgcat 282  Q
    |||||||||||||||||||||||| ||| ||||| |||| ||||||||   | |||||||||||||||||||||||||||||||||||||||||||||||    
T  11911009 cattactgagggaaaattccgtcagtaatattaccgacgccagtattattgagggacactaatccgccactaatgtgtgttattgagggatatattgcat 11911108  T
Q  283 tactgaggatttatttcccccagtaaaaaccaaaattcttgtagtg 328  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||    
T  11911109 tactgagggtttatttcccccagtaaaagccaaaattcttgtagtg 11911154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 183 - 302
Target Start/End: Complemental strand, 12386985 - 12386867
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacgtcagtattacctaaggacactaatccgccactaatgtgtgttattgagggatatattgcat 282  Q
    ||||||||||| |||||||||| | |||||||||||||| ||||||||   | ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  12386985 cattactgaggaaaaattccgttagtaacattactgacgccagtattattgagggacactaatccgccactaatatgtgtt-ttgagggatatattgcat 12386887  T
Q  283 tactgaggatttatttcccc 302  Q
    ||||| || |||||||||||    
T  12386886 tactgggggtttatttcccc 12386867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 183 - 328
Target Start/End: Original strand, 31982626 - 31982771
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacgtcagtattacctaaggacactaatccgccactaatgtgtgttattgagggatatattgcat 282  Q
    ||||||||||||||| ||||| || |||||||||| ||| |||||||||  | |||||| |||||| || |||||||| ||| |||||||| |  | |||    
T  31982626 cattactgagggaaatttccgccagtaacattactaacgccagtattactgagggacaccaatccgtcagtaatgtgtattactgagggattttctccat 31982725  T
Q  283 tactgaggatttatttcccccagtaaaaaccaaaattcttgtagtg 328  Q
    ||||| || |||| |||| |||||||||  ||||||||||||||||    
T  31982726 tactgggggtttaattccgccagtaaaacacaaaattcttgtagtg 31982771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 31982474 - 31982521
Alignment:
Q  112 attactggcggaattttccctcagtaatctagaggtggttttgacaaa 159  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||    
T  31982474 attactggcggaattttccctcagtaatgtaaaggtggttttgacaaa 31982521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 52631208 - 52631261
Alignment:
Q  106 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 159  Q
    ||||| ||||||||||||||||||||||||||||  |||||| |||||||||||    
T  52631208 ataaacattactggcggaattttccctcagtaatgcagaggtagttttgacaaa 52631261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 12387114 - 12387075
Alignment:
Q  157 aaaatgatgaggtagttttgacaaagcattactgagggaa 196  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  12387114 aaaatggtgaggtagttttgacaaagcattactgagggaa 12387075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 39806025 - 39805978
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacgtcagtatta 230  Q
    |||||| ||||||||||||| ||| |||||||||||||||||||||||    
T  39806025 cattacagagggaaaattccatcagtaacattactgacgtcagtatta 39805978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 19752701 - 19752754
Alignment:
Q  106 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 159  Q
    ||||| |||||||||||||||||| |||||||||  |||||| |||||||||||    
T  19752701 ataaacattactggcggaattttctctcagtaatgcagaggtagttttgacaaa 19752754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 19787105 - 19787052
Alignment:
Q  106 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 159  Q
    ||||| |||||||||||||||||| |||||||||  |||||| |||||||||||    
T  19787105 ataaacattactggcggaattttctctcagtaatgcagaggtagttttgacaaa 19787052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 11911012 - 11910961
Alignment:
Q  159 aatgatgaggtagttttgacaaagcattactgagggaaaattccgtcaataa 210  Q
    ||||| ||| |||||||||||||||||||||||||||| | ||| |||||||    
T  11911012 aatgaagagatagttttgacaaagcattactgagggaataatccctcaataa 11910961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 11911040 - 11910990
Alignment:
Q  109 aatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 159  Q
    |||||||||| ||||||||||||||||||||  |||| | |||||||||||    
T  11911040 aatattactgacggaattttccctcagtaatgaagagatagttttgacaaa 11910990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 19752738 - 19752768
Alignment:
Q  165 gaggtagttttgacaaagcattactgaggga 195  Q
    |||||||||||||||||||||||||||||||    
T  19752738 gaggtagttttgacaaagcattactgaggga 19752768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 195
Target Start/End: Complemental strand, 19787068 - 19787038
Alignment:
Q  165 gaggtagttttgacaaagcattactgaggga 195  Q
    |||||||||||||||||||||||||||||||    
T  19787068 gaggtagttttgacaaagcattactgaggga 19787038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 31982653 - 31982607
Alignment:
Q  113 ttactggcggaattttccctcagtaatctagaggtggttttgacaaa 159  Q
    |||||||||||| |||||||||||||| | ||| |||||||||||||    
T  31982653 ttactggcggaaatttccctcagtaatgttgagatggttttgacaaa 31982607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 52631093 - 52631143
Alignment:
Q  14 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaaa 64  Q
    |||||||||| || ||||||||||||||| ||| | |||||||||||||||    
T  52631093 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaaa 52631143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 52631299 - 52631337
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacg 221  Q
    |||||||||||||||||| || |||||||||||||||||    
T  52631299 cattactgagggaaaatttcgccaataacattactgacg 52631337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 12386982 - 12387019
Alignment:
Q  159 aatgatgaggtagttttgacaaagcattactgagggaa 196  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  12386982 aatgaagagatagttttgacaaagcattactgagggaa 12387019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 19752588 - 19752637
Alignment:
Q  14 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 63  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  19752588 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 19752637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 19787218 - 19787169
Alignment:
Q  14 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 63  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  19787218 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 19787169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 41381638 - 41381820
Alignment:
Q  14 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaaatgcattactaacagaatttttcctcggtaatgtgattcttcataaatat 113  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||    
T  41381638 atttgtgtttgattaattttatttctttatttatattaaataagtggaaaatgcattactgacagagtttttccttggtaatgtgattctccataaatat 41381737  T
Q  114 tactggcggaattttccctcagtaatctagaggtggttttgacaaaatgatgaggtagttttgacaaagcattactgagggaa 196  Q
    || |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  41381738 tattggcagaattttccgtcagtaatctagaggtggttttgacaaaatgatgaggtagttttgacaaagctttacggagggaa 41381820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 183 - 328
Target Start/End: Original strand, 9199534 - 9199679
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacgtcagtattacctaaggacactaatccgccactaatgtgtgttattgagggatatattgcat 282  Q
    ||||||||| ||||||||||| || |||||||||||||| |||||||||  | ||| || |||| ||||||||||||||||| |||||||||| ||  ||    
T  9199534 cattactgaaggaaaattccgccagtaacattactgacgccagtattactgagggatacgaatctgccactaatgtgtgttactgagggatattttatat 9199633  T
Q  283 tactgaggatttatttcccccagtaaaaaccaaaattcttgtagtg 328  Q
    || ||||| ||||||||||||| |||||||||||||||||||||||    
T  9199634 tattgagggtttatttcccccaataaaaaccaaaattcttgtagtg 9199679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 183 - 304
Target Start/End: Original strand, 41381922 - 41382043
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacgtcagtattacctaaggacactaatccgccactaatgtgtgttattgagggatatattgcat 282  Q
    |||||||||||||||||||||||| ||| |||  | ||| |||||||||  | ||||||||||||||||||||||||||||||||| |||||||||||||    
T  41381922 cattactgagggaaaattccgtcagtaatattgtttacgccagtattactgagggacactaatccgccactaatgtgtgttattgaaggatatattgcat 41382021  T
Q  283 tactgaggatttatttccccca 304  Q
    ||| |||| |||||||||||||    
T  41382022 taccgagggtttatttccccca 41382043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 36339946 - 36339999
Alignment:
Q  106 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 159  Q
    ||||| ||||||||||||||||||||||||||||  |||||| |||||||||||    
T  36339946 ataaacattactggcggaattttccctcagtaatgcagaggtagttttgacaaa 36339999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 17506162 - 17506213
Alignment:
Q  277 ttgcattactgaggatttatttcccccagtaaaaaccaaaattcttgtagtg 328  Q
    ||||||||||||||  |||||||  |||||||||||||||||||||||||||    
T  17506162 ttgcattactgagggattatttctgccagtaaaaaccaaaattcttgtagtg 17506213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 36339983 - 36340024
Alignment:
Q  165 gaggtagttttgacaaagcattactgagggaaaattccgtca 206  Q
    |||||||||||||||||||||||||||||||  |||||||||    
T  36339983 gaggtagttttgacaaagcattactgagggattattccgtca 36340024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 23666638 - 23666590
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacgtcagtattac 231  Q
    ||||||||||||||||||||| || |||||||||||||| || ||||||    
T  23666638 cattactgagggaaaattccgccattaacattactgacgccactattac 23666590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 37094574 - 37094527
Alignment:
Q  184 attactgagggaaaattccgtcaataacattactgacgtcagtattac 231  Q
    ||||| ||| ||||||||||||| |||||||||||||| |||||||||    
T  37094574 attaccgagagaaaattccgtcagtaacattactgacgccagtattac 37094527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 41381953 - 41381903
Alignment:
Q  109 aatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 159  Q
    |||||||||| ||||||||||||||||||||   ||||| |||||||||||    
T  41381953 aatattactgacggaattttccctcagtaatgatgaggtagttttgacaaa 41381903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 45470138 - 45470184
Alignment:
Q  186 tactgagggaaaattccgtcaataacattactgacgtcagtattacc 232  Q
    ||||||||||| |||||| || |||||||||||||| ||||||||||    
T  45470138 tactgagggaatattccgccagtaacattactgacgccagtattacc 45470184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 36339832 - 36339881
Alignment:
Q  14 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 63  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  36339832 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 36339881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 41381925 - 41381888
Alignment:
Q  159 aatgatgaggtagttttgacaaagcattactgagggaa 196  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  41381925 aatgatgaggtagttttgacaaagctttacggagggaa 41381888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 17506057 - 17506093
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactga 219  Q
    |||||||||||||||||||||| | ||||||||||||    
T  17506057 cattactgagggaaaattccgttagtaacattactga 17506093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 23662386 - 23662350
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactga 219  Q
    ||||||||||||||||||||| || ||||||||||||    
T  23662386 cattactgagggaaaattccgccattaacattactga 23662350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 183 - 328
Target Start/End: Original strand, 35046410 - 35046554
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacgtcagtattacctaaggacactaatccgccactaatgtgtgttattgagggatatattgcat 282  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||    
T  35046410 cattactgagggaaaattccatcagtaacattactgacgtcagtattactgagggacactaatccgccactaatgtgtgttattgagggatatattgcat 35046509  T
Q  283 tactgaggatttatttcccccagtaaaaaccaaaattcttgtagtg 328  Q
    |||||||| |||| |||||| |||||||||||||||||||||||||    
T  35046510 tactgagggttta-ttcccctagtaaaaaccaaaattcttgtagtg 35046554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 35046190 - 35046351
Alignment:
Q  14 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaaatgcattactaacagaatttttcctcggtaatgtgattcttcataaatat 113  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| |          ||||| |||||||||    
T  35046190 atttgtgtttgattaattttatttctttatttatattaaataagtggaaaatgcattactgacagaatttttctt----------attctccataaatat 35046279  T
Q  114 tactggcggaattttccctcagtaatctagaggtggttttgacaaaatgatgaggtagttttgacaaagcat 185  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35046280 tactggcggaattttccctcaataatctagaggtggtttttacaaaatgatgaggtagttttgacaaagcat 35046351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 19285122 - 19285076
Alignment:
Q  185 ttactgagggaaaattccgtcaataacattactgacgtcagtattac 231  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||    
T  19285122 ttactgagggaaaattccgtcagtaacattactgacgccagtattac 19285076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 32243572 - 32243625
Alignment:
Q  106 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 159  Q
    ||||| ||||||||||||||||||||||||||||  |||||| |||||||||||    
T  32243572 ataaacattactggcggaattttccctcagtaatgcagaggtagttttgacaaa 32243625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 17131277 - 17131330
Alignment:
Q  106 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 159  Q
    ||||| |||||||||||||| |||||||||||||  |||||| |||||||||||    
T  17131277 ataaacattactggcggaatattccctcagtaatgcagaggtagttttgacaaa 17131330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 17131314 - 17131344
Alignment:
Q  165 gaggtagttttgacaaagcattactgaggga 195  Q
    |||||||||||||||||||||||||||||||    
T  17131314 gaggtagttttgacaaagcattactgaggga 17131344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 27768989 - 27769055
Alignment:
Q  262 ttattgagggatatattgcattactgaggatttatttcccccagtaaaaaccaaaattcttgtagtg 328  Q
    |||||||||||| | | |||||| |||||  |||||||| | |||| ||||||||||||||||||||    
T  27768989 ttattgagggatttttggcattattgagggattatttccgctagtagaaaccaaaattcttgtagtg 27769055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 32243609 - 32243639
Alignment:
Q  165 gaggtagttttgacaaagcattactgaggga 195  Q
    |||||||||||||||||||||||||||||||    
T  32243609 gaggtagttttgacaaagcattactgaggga 32243639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 17131162 - 17131211
Alignment:
Q  14 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 63  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  17131162 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 17131211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 32243459 - 32243508
Alignment:
Q  14 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 63  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  32243459 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 32243508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 189 - 328
Target Start/End: Original strand, 15725 - 15864
Alignment:
Q  189 tgagggaaaattccgtcaataacattactgacgtcagtattacctaaggacactaatccgccactaatgtgtgttattgagggatatattgcattactga 288  Q
    |||||||||||||||||| |||||||||||||  |||||||||  | |||||||||||||||||||||||||||||||||||||||||||| || | |||    
T  15725 tgagggaaaattccgtcagtaacattactgacaccagtattactgagggacactaatccgccactaatgtgtgttattgagggatatattgtataaatga 15824  T
Q  289 ggatttatttcccccagtaaaaaccaaaattcttgtagtg 328  Q
    || ||||||| ||||| |||||||||||||||||||||||    
T  15825 gggtttattttccccaataaaaaccaaaattcttgtagtg 15864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 183 - 328
Target Start/End: Original strand, 9613581 - 9613724
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacgtcagtattacctaaggacactaatccgccactaatgtgtgttattgagggatatattgcat 282  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    ||| || |||| | ||||||||||||||| |||||||||| || |||    
T  9613581 cattactgagggaaaattccgccaataacattactgacgtcagtattactg--ggatacaaatctgtcactaatgtgtgttactgagggatattttacat 9613678  T
Q  283 tactgaggatttatttcccccagtaaaaaccaaaattcttgtagtg 328  Q
    ||||| || ||||||||||||| |||||||||||||||||||||||    
T  9613679 tactgggggtttatttcccccaataaaaaccaaaattcttgtagtg 9613724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 184 - 298
Target Start/End: Original strand, 40929559 - 40929673
Alignment:
Q  184 attactgagggaaaattccgtcaataacattactgacgtcagtattacctaaggacactaatccgccactaatgtgtgttattgagggatatattgcatt 283  Q
    ||||||||||||||||||||||| ||| |||||||||| |||||||||  | |||  | |||| ||||||||||||||||| |||||||||| || ||||    
T  40929559 attactgagggaaaattccgtcagtaatattactgacgccagtattactgagggatgcaaatctgccactaatgtgtgttactgagggatattttacatt 40929658  T
Q  284 actgaggatttattt 298  Q
    ||||||| |||||||    
T  40929659 actgagggtttattt 40929673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 183 - 328
Target Start/End: Complemental strand, 27408115 - 27407970
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacgtcagtattacctaaggacactaatccgccactaatgtgtgttattgagggatatattgcat 282  Q
    ||||||| ||||||| ||||| || |||||||||| ||| |||||||||  | |||||| |||||| || |||||||| ||| |||||||| |  | |||    
T  27408115 cattacttagggaaatttccgccagtaacattactaacgccagtattactgagggacaccaatccgtcagtaatgtgtattactgagggattttctccat 27408016  T
Q  283 tactgaggatttatttcccccagtaaaaaccaaaattcttgtagtg 328  Q
    |||||||| |||| ||||  ||||||||  ||||||||||||||||    
T  27408015 tactgagggtttaattccgtcagtaaaacacaaaattcttgtagtg 27407970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 27408266 - 27408219
Alignment:
Q  112 attactggcggaattttccctcagtaatctagaggtggttttgacaaa 159  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||    
T  27408266 attactggcggaattttccctcagtaatgtaaaggtggttttgacaaa 27408219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 20007856 - 20007904
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacgtcagtattac 231  Q
    |||||| |||||||||||||| || |||||||||||||| |||||||||    
T  20007856 cattacagagggaaaattccgccagtaacattactgacgccagtattac 20007904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 20007714 - 20007762
Alignment:
Q  112 attactggcggaattttccctcagtaatctagaggtggttttgacaaaa 160  Q
    |||||||| |||| |||| |||||||||  |||||||||||||||||||    
T  20007714 attactggtggaaatttctctcagtaatgaagaggtggttttgacaaaa 20007762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 37441328 - 37441372
Alignment:
Q  186 tactgagggaaaattccgtcaataacattactgacgtcagtatta 230  Q
    ||||||| ||| |||||| | ||||||||||||||||||||||||    
T  37441328 tactgagtgaatattccgccgataacattactgacgtcagtatta 37441372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 186 - 327
Target Start/End: Complemental strand, 48504142 - 48504001
Alignment:
Q  186 tactgagggaaaattccgtcaataacattactgacgtcagtattacctaaggacactaatccgccactaatgtgtgttattgagggatatattgcattac 285  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||  |||||  | |||| ||||||||||||||||| ||||||| || || |||||     
T  48504142 tactgagggaaaattccgtcagtaacattactgacgccagtattactgaaggatgcaaatctgccactaatgtgtgttactgagggaaattttacattat 48504043  T
Q  286 tgaggatttatttcccccagtaaaaaccaaaattcttgtagt 327  Q
    ||||| ||||||||||||| ||||||||||||||||||||||    
T  48504042 tgagggtttatttcccccaataaaaaccaaaattcttgtagt 48504001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 339 - 390
Target Start/End: Complemental strand, 34773294 - 34773243
Alignment:
Q  339 ctttcgaagaatagagcatggttatgttaagaacatggcgatgtatgcatgt 390  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34773294 ctttcgaggaatagagcatggttatgttaagaacatggcgatgtatgcatgt 34773243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 19027394 - 19027436
Alignment:
Q  114 tactggcggaattttccctcagtaatctagaggtggttttgac 156  Q
    ||||||||||||||||||||||||||  |||||||||||||||    
T  19027394 tactggcggaattttccctcagtaatgaagaggtggttttgac 19027436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 5947776 - 5947823
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacgtcagtatta 230  Q
    |||||||||||||||||| || || |||||||||||||| ||||||||    
T  5947776 cattactgagggaaaatttcgccagtaacattactgacgccagtatta 5947823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 10030028 - 10029981
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacgtcagtatta 230  Q
    ||||||| ||||||||||||| || |||||||||||||| ||||||||    
T  10030028 cattacttagggaaaattccggcagtaacattactgacgccagtatta 10029981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 325
Target Start/End: Complemental strand, 12156422 - 12156341
Alignment:
Q  243 aatccgccactaatgtgtgttattgagggatatattgcattactgaggatttatttcccccagtaaaaaccaaaattcttgta 325  Q
    |||| ||||| ||||| ||||| |||||||||| || ||||| ||||| |||||||| || | ||||| ||||||||||||||    
T  12156422 aatctgccaccaatgtatgttactgagggatattttacattattgagggtttatttctccaa-taaaagccaaaattcttgta 12156341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 19027492 - 19027538
Alignment:
Q  184 attactgagggaaaattccgtcaataacattactgacgtcagtatta 230  Q
    |||||||||||||||||||| || ||| ||||||||||| |||||||    
T  19027492 attactgagggaaaattccgccagtaatattactgacgttagtatta 19027538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 139
Target Start/End: Complemental strand, 19027522 - 19027492
Alignment:
Q  109 aatattactggcggaattttccctcagtaat 139  Q
    |||||||||||||||||||||||||||||||    
T  19027522 aatattactggcggaattttccctcagtaat 19027492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 6161795 - 6161742
Alignment:
Q  106 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 159  Q
    ||||| |||| |||||||||||||||||||||||  |||||| ||||| |||||    
T  6161795 ataaacattattggcggaattttccctcagtaatgcagaggtagttttcacaaa 6161742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 28989715 - 28989666
Alignment:
Q  279 gcattactgaggatttatttcccccagtaaaaaccaaaattcttgtagtg 328  Q
    |||||| |||||  |||||||| || ||||||||||||||||||||||||    
T  28989715 gcattattgagggattatttccgccggtaaaaaccaaaattcttgtagtg 28989666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 166 - 328
Target Start/End: Complemental strand, 29914691 - 29914529
Alignment:
Q  166 aggtagttttgacaaagcattactgagggaaaattccgtcaataacattactgacgtcagtattacctaaggacactaatccgccactaatgtgtgttat 265  Q
    |||| ||||||||||| |||||||||||||  |||||| || ||||||||||||||| ||||||||  | |||||| |||||| || |||||||| |||     
T  29914691 aggtggttttgacaaaccattactgagggattattccgccagtaacattactgacgttagtattactgagggacaccaatccgtcattaatgtgtattac 29914592  T
Q  266 tgagggatatattgcattactgaggatttatttcccccagtaaaaaccaaaattcttgtagtg 328  Q
    |||||||| |  | ||||||||||| |||| |||| |||||||||  ||||||||||||||||    
T  29914591 tgagggattttctccattactgagggtttaattccgccagtaaaacacaaaattcttgtagtg 29914529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 2238192 - 2238110
Alignment:
Q  189 tgagggaaaattccgtcaataacattactgacgtcagtattacctaaggacactaatccgccactaatgtgtgttattgaggg 271  Q
    |||||||||||||||||| |||||||||||||| |||||||||  | ||| || |||| ||||||||||||||||| ||||||    
T  2238192 tgagggaaaattccgtcagtaacattactgacgccagtattactgagggatacaaatctgccactaatgtgtgttactgaggg 2238110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 328
Target Start/End: Complemental strand, 26246952 - 26246808
Alignment:
Q  184 attactgagggaaaattccgtcaataacattactgacgtcagtattacctaaggacactaatccgccactaatgtgtgttattgagggatatattgcatt 283  Q
    |||||||||| ||||||||| || |||||||| ||||| |||||||||  | |||||| |||  |||| ||||||||| || |||||||| | | |||||    
T  26246952 attactgaggaaaaattccgccagtaacattattgacgccagtattactgagggacaccaatttgccagtaatgtgtggtactgagggatttttggcatt 26246853  T
Q  284 actgaggatttatttcccccagtaaaaaccaaaattcttgtagtg 328  Q
    ||||||| |||| |||  ||| |||||  |||||||| |||||||    
T  26246852 actgagggtttaattctgccactaaaatgcaaaattcctgtagtg 26246808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 35819271 - 35819324
Alignment:
Q  106 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 159  Q
    ||||| ||||||||||||||||||||||||||||  |||||| |||||||||||    
T  35819271 ataaacattactggcggaattttccctcagtaatgcagaggtagttttgacaaa 35819324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 37707258 - 37707306
Alignment:
Q  112 attactggcggaattttccctcagtaatctagaggtggttttgacaaaa 160  Q
    ||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  37707258 attactggcggaattttccatcagtaatgaagaggtggttttgacaaaa 37707306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 29914723 - 29914676
Alignment:
Q  112 attactggcggaattttccctcagtaatctagaggtggttttgacaaa 159  Q
    ||||||||||||||||| |||||||||| || ||||||||||||||||    
T  29914723 attactggcggaatttttcctcagtaatgtaaaggtggttttgacaaa 29914676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 328
Target Start/End: Complemental strand, 2238119 - 2238073
Alignment:
Q  282 ttactgaggatttatttcccccagtaaaaaccaaaattcttgtagtg 328  Q
    ||||||||| |||||||||| || |||||||||||||||||||||||    
T  2238119 ttactgagggtttatttccctcaataaaaaccaaaattcttgtagtg 2238073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 328
Target Start/End: Complemental strand, 21493792 - 21493647
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacg-tcagtattacctaaggacactaatccgccactaatgtgtgttattgagggatatattgca 281  Q
    ||||||||||||||||||||| || |||||||||||||| ||| ||||||  | |||  |  || ||||| |||| |||  || |||||||| | | ||     
T  21493792 cattactgagggaaaattccgccagtaacattactgacgctca-tattactgagggattcatattcgccagtaatatgtactactgagggatttttggcg 21493694  T
Q  282 ttactgaggatttatttcccccagtaaaaaccaaaattcttgtagtg 328  Q
    |||||||||  |||||||| ||||||||||||| | |||||||||||    
T  21493693 ttactgagggattatttccgccagtaaaaaccagatttcttgtagtg 21493647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 21493765 - 21493811
Alignment:
Q  113 ttactggcggaattttccctcagtaatctagaggtggttttgacaaa 159  Q
    |||||||||||||||||||||||||||  |||||| |||||||||||    
T  21493765 ttactggcggaattttccctcagtaatggagaggtagttttgacaaa 21493811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 27873882 - 27873928
Alignment:
Q  184 attactgagggaaaattccgtcaataacattactgacgtcagtatta 230  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  27873882 attactgagggcaaattccgtcagtaacattactgacgccagtatta 27873928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 328
Target Start/End: Original strand, 27873952 - 27874037
Alignment:
Q  243 aatccgccactaatgtgtgttattgagggatatattgcattactgaggatttatttcccccagtaaaaaccaaaattcttgtagtg 328  Q
    ||||| ||| |||||| | ||| |||||||| | || |||||||||||| ||| |||| ||| ||| |||||||||||||||||||    
T  27873952 aatccaccagtaatgtctattactgagggatttctttcattactgaggaattaattccgccaataataaccaaaattcttgtagtg 27874037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 4896819 - 4896867
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacgtcagtattac 231  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||    
T  4896819 cattactgagggaaaattctgccagtaacattactgacgccagtattac 4896867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 21493795 - 21493825
Alignment:
Q  165 gaggtagttttgacaaagcattactgaggga 195  Q
    |||||||||||||||||||||||||||||||    
T  21493795 gaggtagttttgacaaagcattactgaggga 21493825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 26246926 - 26246972
Alignment:
Q  113 ttactggcggaattttccctcagtaatctagaggtggttttgacaaa 159  Q
    |||||||||||||||| ||||||||||  |||||| |||||||||||    
T  26246926 ttactggcggaatttttcctcagtaatagagaggtagttttgacaaa 26246972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 35819308 - 35819338
Alignment:
Q  165 gaggtagttttgacaaagcattactgaggga 195  Q
    |||||||||||||||||||||||||||||||    
T  35819308 gaggtagttttgacaaagcattactgaggga 35819338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 21493961 - 21493912
Alignment:
Q  14 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 63  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  21493961 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 21493912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 4896559 - 4896603
Alignment:
Q  14 atttgtgtttgattaattttatttctttatttatatttaaaaagt 58  Q
    |||||||||| |||||||||||||||||| ||| | |||||||||    
T  4896559 atttgtgtttaattaattttatttctttaattaaaattaaaaagt 4896603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 4896676 - 4896708
Alignment:
Q  107 taaatattactggcggaattttccctcagtaat 139  Q
    |||| ||||||||||||||||||||||||||||    
T  4896676 taaacattactggcggaattttccctcagtaat 4896708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 37707409 - 37707457
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacgtcagtattac 231  Q
    ||||||||||||||||||||| || |||||||| ||||| || ||||||    
T  37707409 cattactgagggaaaattccgccagtaacattattgacgccaatattac 37707457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 185 - 328
Target Start/End: Original strand, 32093311 - 32093454
Alignment:
Q  185 ttactgagggaaaattccgtcaataacattactgacgtcagtattacctaaggacactaatccgccactaatgtgtgttattgagggatatattgcatta 284  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||  | |||||| ||||||||| ||||| ||  || |||||||| | ||||||||    
T  32093311 ttactgagggaaaattccgtcagtaacattactgacgccagtattactgagggacaccaatccgccagtaatgcgtagtactgagggattttttgcatta 32093410  T
Q  285 ctgaggatttatttcccccagtaaaaaccaaaattcttgtagtg 328  Q
     ||||| |||| |||  |||||||||  ||||||||||||||||    
T  32093411 ttgagggtttaattctgccagtaaaatgcaaaattcttgtagtg 32093454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 31202765 - 31202813
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacgtcagtattac 231  Q
    |||||||||||||| ||||||||  |||||||| ||||| |||||||||    
T  31202765 cattactgagggaatattccgtcggtaacattattgacgccagtattac 31202813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 63296 - 63243
Alignment:
Q  106 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 159  Q
    ||||| ||||||||||||||||||||||||||||  |||||| |||||||||||    
T  63296 ataaacattactggcggaattttccctcagtaatgcagaggtagttttgacaaa 63243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 195
Target Start/End: Complemental strand, 63259 - 63229
Alignment:
Q  165 gaggtagttttgacaaagcattactgaggga 195  Q
    |||||||||||||||||||||||||||||||    
T  63259 gaggtagttttgacaaagcattactgaggga 63229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 63409 - 63360
Alignment:
Q  14 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 63  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  63409 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 63360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 295939 - 295986
Alignment:
Q  184 attactgagggaaaattccgtcaataacattactgacgtcagtattac 231  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||    
T  295939 attactgagggaaaattccgccaataacattactgacgccattattac 295986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 294951 - 294998
Alignment:
Q  184 attactgagggaaaattccgtcaataacattactgacgtcagtattac 231  Q
    |||||||||||||||||||| || |||||||||||| | |||||||||    
T  294951 attactgagggaaaattccgccagtaacattactgatgccagtattac 294998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 328
Target Start/End: Complemental strand, 187715 - 187573
Alignment:
Q  186 tactgagggaaaattccgtcaataacattactgacgtcagtattacctaaggacactaatccgccactaatgtgtgttattgagggatatattgcattac 285  Q
    ||||||||||| |||||| |  |||||||||||| |||||||||||  | ||||||||||||  || |||| |   ||| |||  ||| |  |||||||     
T  187715 tactgagggaatattccgccggtaacattactgatgtcagtattactgagggacactaatccctcagtaatatccattactgacagattttgtgcattat 187616  T
Q  286 tgaggatttatttcccccagtaaaaaccaaaattcttgtagtg 328  Q
    ||||| ||||||||| ||||||| || |||| |||||||||||    
T  187615 tgagggtttatttccgccagtaataaacaaatttcttgtagtg 187573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 328
Target Start/End: Complemental strand, 4664028 - 4663883
Alignment:
Q  183 cattactgagggaaaattccgtcaataacattactgacgtcagtattacctaaggacactaatccgccactaatgtgtgttattgagggatatattgcat 282  Q
    ||||||| ||| |||| ||||||| ||||| || ||||  |||||||||  | |||||  ||||||||| ||||| |  ||| |||||||| | ||||||    
T  4664028 cattactcaggaaaaaatccgtcagtaacaatattgactccagtattactgagggacatcaatccgccagtaatgggcattactgagggatgttttgcat 4663929  T
Q  283 tactgaggatttatttcccccagtaaaaaccaaaattcttgtagtg 328  Q
    || ||||| |||| |||  |||||||||   |||||||||||||||    
T  4663928 tagtgagggtttagttctgccagtaaaatgaaaaattcttgtagtg 4663883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 35085382 - 35085331
Alignment:
Q  107 taaatattactggcggaattttccctcagtaatctagaggtggttttgacaa 158  Q
    |||| |||||| ||||||||||||||| |||||  |||||||||||||||||    
T  35085382 taaacattactagcggaattttccctcggtaatgaagaggtggttttgacaa 35085331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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