View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8826_high_4 (Length: 301)

Name: NF8826_high_4
Description: NF8826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8826_high_4
NF8826_high_4
[»] chr5 (3 HSPs)
chr5 (11-293)||(38495507-38495781)
chr5 (124-200)||(10512875-10512948)
chr5 (124-200)||(17341327-17341400)
[»] chr1 (2 HSPs)
chr1 (74-293)||(52113592-52113810)
chr1 (11-59)||(52113547-52113595)
[»] chr7 (2 HSPs)
chr7 (11-68)||(15059528-15059585)
chr7 (26-82)||(23814845-23814901)
[»] chr4 (2 HSPs)
chr4 (34-82)||(44229698-44229746)
chr4 (28-82)||(26348688-26348742)
[»] chr2 (1 HSPs)
chr2 (30-81)||(28385651-28385702)
[»] chr3 (1 HSPs)
chr3 (124-190)||(20809063-20809126)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 38495507 - 38495781
Alignment:
Q  11 catcaccaccactagcaccgtcctcgtcagtcacaaccgccgccgtcctcactgcaccctccatcctaaccattccttctcatcttttgtgtcgtcttcc 110  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38495507 catcaccaccaccatcaccgtcctcgtcagtcacaaccgccgccgtcctcactgcaccctccatcctaaccattccttctcatcttttgtgtcgtcttcc 38495606  T
Q  111 tcaccaccgcaaccaccatcaatctattcagatatgctctccctcacgccgtcgccagtgacatcctcttctccctcacaccgccgacgacccgttcata 210  Q
    ||||||||||||||||||||||||||||||||| ||||||      |||| ||||| |||||||||||||||||||||||||||||||||||   |||||    
T  38495607 tcaccaccgcaaccaccatcaatctattcagatctgctct------cgccttcgccggtgacatcctcttctccctcacaccgccgacgacc--gtcata 38495698  T
Q  211 tccctaaaaccacaccggtgacaacttttccaaaaacaacaccttccgataatcttctctacgaacctgtcagtgatgatgtc 293  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38495699 tcactaaaaccacaccggtgacaacttttccaaaaacaacaccttccgataatcttctctacgaacctgtcagtgacgatgtc 38495781  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 10512948 - 10512875
Alignment:
Q  124 caccatcaatctattcagatatgctctccctcacgccgtcgccagtgacatcctcttctccctcacaccgccgacga 200  Q
    ||||||||||||||||||||  ||||||||| |||   ||||| |||||||| |||||||||||||| || ||||||    
T  10512948 caccatcaatctattcagatcagctctccctgacg---tcgccggtgacatcgtcttctccctcacatcggcgacga 10512875  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 17341327 - 17341400
Alignment:
Q  124 caccatcaatctattcagatatgctctccctcacgccgtcgccagtgacatcctcttctccctcacaccgccgacga 200  Q
    ||||||||||||||||||||  ||||||||||||||   ||||  ||||||| |||||||||||||| || ||||||    
T  17341327 caccatcaatctattcagatcagctctccctcacgc---cgccgatgacatcgtcttctccctcacatcggcgacga 17341400  T

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Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 74 - 293
Target Start/End: Original strand, 52113592 - 52113810
Alignment:
Q  74 tcctaaccattccttctcatcttttgtgtcgtcttcctcaccaccgcaaccaccatcaatctattcagatatgctctccctcacgccgtcgccagtgaca 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |    
T  52113592 tcctaaccattccttctcatcttttgtgtcgtcttcctcaccaccgcaaccaccatcaatctattcagatctgctctccctcacgccgtcgccggtga-a 52113690  T
Q  174 tcctcttctccctcacaccgccgacgacccgttcatatccctaaaaccacaccggtgacaacttttccaaaaacaacaccttccgataatcttctctacg 273  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52113691 tcctcttctccctcacaccgccgacgacctgttcatatcactaaaaccacaccggtgacaacttttccaaaaacaacaccttccgataatcttctctacg 52113790  T
Q  274 aacctgtcagtgatgatgtc 293  Q
    ||||||||||||| ||||||    
T  52113791 aacctgtcagtgacgatgtc 52113810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 52113547 - 52113595
Alignment:
Q  11 catcaccaccactagcaccgtcctcgtcagtcacaaccgccgccgtcct 59  Q
    |||||||||||| | |||| |||||||||||||||||||||||||||||    
T  52113547 catcaccaccaccatcaccttcctcgtcagtcacaaccgccgccgtcct 52113595  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 15059585 - 15059528
Alignment:
Q  11 catcaccaccactagcaccgtcctcgtcagtcacaaccgccgccgtcctcactgcacc 68  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  15059585 catcaccaccaccatcaccgtcctcgtcagtcacaaccgccgccgtcctcactgcacc 15059528  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 23814845 - 23814901
Alignment:
Q  26 caccgtcctcgtcagtcacaaccgccgccgtcctcactgcaccctccatcctaacca 82  Q
    |||||| ||| | |||||||||| ||  ||||||||| |||||||||||||||||||    
T  23814845 caccgttctcattagtcacaaccaccaacgtcctcaccgcaccctccatcctaacca 23814901  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 44229746 - 44229698
Alignment:
Q  34 tcgtcagtcacaaccgccgccgtcctcactgcaccctccatcctaacca 82  Q
    ||||||||||||||| || |||||||||| |||||||||||||||||||    
T  44229746 tcgtcagtcacaaccaccaccgtcctcaccgcaccctccatcctaacca 44229698  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 26348742 - 26348688
Alignment:
Q  28 ccgtcctcgtcagtcacaaccgccgccgtcctcactgcaccctccatcctaacca 82  Q
    ||||||| ||||||||||||| ||| ||||||||| |||||||||||| ||||||    
T  26348742 ccgtccttgtcagtcacaaccaccgtcgtcctcaccgcaccctccatcataacca 26348688  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 28385651 - 28385702
Alignment:
Q  30 gtcctcgtcagtcacaaccgccgccgtcctcactgcaccctccatcctaacc 81  Q
    |||||||| | |||||||| || |||||||||||||||| ||||||||||||    
T  28385651 gtcctcgttaatcacaaccacctccgtcctcactgcaccttccatcctaacc 28385702  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 20809126 - 20809063
Alignment:
Q  124 caccatcaatctattcagatatgctctccctcacgccgtcgccagtgacatcctcttctccctcaca 190  Q
    |||||||||||||||||| |  |||||||||||   ||||||| |||||||| |||| |||||||||    
T  20809126 caccatcaatctattcaggtcagctctccctca---cgtcgccggtgacatcgtcttttccctcaca 20809063  T

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