View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8826_high_6 (Length: 238)
Name: NF8826_high_6
Description: NF8826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8826_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 9268261 - 9268042
Alignment:
| Q |
14 |
ataacatcaccagattttctagaagcttcgatgagaatattcggattctttaactgattattagtcctagggaacattgtttcataggtttcaaggttaa |
113 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9268261 |
ataacatcaccagattttctagaagcttcgatgcgaatattcggattctttaactgattattagtcctagggaacattgtttcataggtttcaaggttaa |
9268162 |
T |
|
| Q |
114 |
gagtatctcttccatcagtgtttgatttcatccaaagaggctcacacacacgctttgcttacatcattaggagcactatataaatatactctcaatttgg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || ||||| ||||||||||||| |
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| T |
9268161 |
gagtatctcttccatcagtgtttgatttcatccaaagaggct--cacgcacgctttgcttacatcattaggagcaccctacaaatagactctcaatttgg |
9268064 |
T |
|
| Q |
214 |
aaacaaaaacacttgcattgca |
235 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
9268063 |
aaacaaaaacacttgctttgca |
9268042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 9263972 - 9263763
Alignment:
| Q |
25 |
agattttctagaagcttcgatgagaatattcggattcttt-aactgattattagtcctagggaacattgtttcataggtttcaaggttaagagtatctct |
123 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
9263972 |
agattttctagaagcttcgatgtgaatattcggattcttttaactgattattagtcctagagaacattgtttcataggtttcaaggttatgagtatctct |
9263873 |
T |
|
| Q |
124 |
tccatcagtgtttgatttcatccaaagaggctcacacacacgctttgcttacatcattaggagcactatataaatatactctcaatttggaaacaaaaac |
223 |
Q |
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||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9263872 |
tccatcaatgtttgatttcatccaaagaggct--aacacgcgctttgcttacatcattaggagcactatataaatagactctcaatttggaaacaaaaac |
9263775 |
T |
|
| Q |
224 |
acttgcattgca |
235 |
Q |
| |
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|||||||||||| |
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| T |
9263774 |
acttgcattgca |
9263763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 9276050 - 9275907
Alignment:
| Q |
14 |
ataacatcaccagattttctagaagcttcgatgagaatattcggattctttaactgattattagtcctagggaacattgtttcataggtttcaaggttaa |
113 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9276050 |
ataacatcaccagattttctagaagcttcgatgcgaatattcggattctttaactgattattagtcctagggaacattgtttcataggtttcaaggttaa |
9275951 |
T |
|
| Q |
114 |
gagtatctcttccatcagtgtttgatttcatccaaagaggctca |
157 |
Q |
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| T |
9275950 |
gagtatctcttccattattgtttgatttcatccaaagaggctca |
9275907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 9282731 - 9282588
Alignment:
| Q |
14 |
ataacatcaccagattttctagaagcttcgatgagaatattcggattctttaactgattattagtcctagggaacattgtttcataggtttcaaggttaa |
113 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9282731 |
ataacatcaccagattttctagaagcttcgatgcgaatattcggattctttaactgattattagtcctagggaacattgtttcataggtttcaaggttaa |
9282632 |
T |
|
| Q |
114 |
gagtatctcttccatcagtgtttgatttcatccaaagaggctca |
157 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
9282631 |
gagtatctcttccattattgtttgatttcatccaaagaggctca |
9282588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 9293702 - 9293559
Alignment:
| Q |
14 |
ataacatcaccagattttctagaagcttcgatgagaatattcggattctttaactgattattagtcctagggaacattgtttcataggtttcaaggttaa |
113 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9293702 |
ataacatcaccagattttctagaagcttcgatgcgaatattcggattctttaactgattattagtcctagggaacattgtttcataggtttcaaggttaa |
9293603 |
T |
|
| Q |
114 |
gagtatctcttccatcagtgtttgatttcatccaaagaggctca |
157 |
Q |
| |
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||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
9293602 |
gagtatctcttccattattgtttgatttcatccaaagaggctca |
9293559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 9223373 - 9223489
Alignment:
| Q |
14 |
ataacatcaccagattttctagaagcttcgatgagaatattcggattctttaactgattattagtcctagggaacattgtttcataggtttcaaggttaa |
113 |
Q |
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|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
9223373 |
ataacatcaccagaatttctagaagcttcgatgcgaatattcggattctttaactgattattagtcctagagaccattgtttcataggtttcaaggttaa |
9223472 |
T |
|
| Q |
114 |
gagtatctcttccatca |
130 |
Q |
| |
|
||||||||||||||||| |
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| T |
9223473 |
gagtatctcttccatca |
9223489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 9262785 - 9262862
Alignment:
| Q |
158 |
cacacacgctttgcttacatcattaggagcactatataaatatactctcaatttggaaacaaaaacacttgcattgca |
235 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9262785 |
cacacgcgctttgcttacatcattaggagcactatataaatagactctcaatttggaaacaaaaacacttgcattgca |
9262862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 9267318 - 9267395
Alignment:
| Q |
158 |
cacacacgctttgcttacatcattaggagcactatataaatatactctcaatttggaaacaaaaacacttgcattgca |
235 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9267318 |
cacacgcgctttgcttacatcattaggagcactatataaatagactctcaatttggaaacaaaaacacttgcattgca |
9267395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 28599299 - 28599177
Alignment:
| Q |
35 |
gaagcttcgatgagaatattcggattctttaactgattattagtcctagggaacattgtttcataggtttcaaggttaagagtatctcttccatcagtgt |
134 |
Q |
| |
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|||||||| ||| |||||||||||||||| ||| ||||| ||||| |||||||||| | |||||| ||||||| |||||| |||| | ||||||| || |
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| T |
28599299 |
gaagcttcaatgcgaatattcggattcttcaaccgattagtagtcttagggaacatcctctcatagttttcaagattaagaacatctttaccatcagagt |
28599200 |
T |
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| Q |
135 |
ttgatttcatccaaagaggctca |
157 |
Q |
| |
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||||||||||||| ||||||||| |
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| T |
28599199 |
ttgatttcatccacagaggctca |
28599177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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