View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8826_low_2 (Length: 493)
Name: NF8826_low_2
Description: NF8826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8826_low_2 |
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| [»] scaffold0022 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 480
Target Start/End: Original strand, 23348152 - 23348613
Alignment:
| Q |
18 |
cttacaatatgaacatttggtttagtggttaatgataaacgttaacttgatgcctaagttagtcaatgaaaacgttgagactacgctaaaagagataact |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
23348152 |
cttacaatctgaacatttggtttagtggttaatgataaacgttaacttgatgcctaagttagtcaatgaaaacgttgagactacgctaaa-gagataaat |
23348250 |
T |
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| Q |
118 |
ctatagacttcaattttagtaggattgagaatcacattgctaacttgcaaacattttttagtagaaactatatatctacaataaaagtctagtttctctt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23348251 |
ctatagacttcaattttagtaggattgagaatcacatcgctaacttgcaaacattttttagtagaaactatatatctacaataaaagtctagtttctcct |
23348350 |
T |
|
| Q |
218 |
acatttttacaacatcattcacgaaggacatgctacttgccaacttttacgacatcaagaatcgaattaagcacatgaaacatgcattttcaaccttctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23348351 |
acatttttacaacatcattcacgaaggacatgctacttgccaacttttacgacatcaagaatcgaattaagcacatgaaacatgtattttcaaccttctt |
23348450 |
T |
|
| Q |
318 |
ttaaacgtattatacagnnnnnnnttagaaggaaaacagaatcaagataaatatgtacctcaatcccatacatgataggcatttccttatccacgagaat |
417 |
Q |
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| T |
23348451 |
ttcaacgtattatacagaaaaaaattagaaggaaaacagaatcaagataaatatgtacctcaatcccatacatgataggcatttccttatccacgagaat |
23348550 |
T |
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| Q |
418 |
aatgtcaaatctttgactaccaatgattatctacagcttccttgccattttttacagcttcat |
480 |
Q |
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| T |
23348551 |
aatgtcaaatctttgactaccaatgattatctacagcttccttgccattttttacagcttcat |
23348613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 60 - 221
Target Start/End: Original strand, 23398095 - 23398252
Alignment:
| Q |
60 |
taacttgatgcctaagttagtcaatgaaaacgttgagactacgctaaaagagataactctatagacttcaattttagtaggattgagaatcacattgcta |
159 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23398095 |
taacttgatgcctaagtttgtcaatgaaaacgttgagactaccctaaa-gagataaatctatagacttcaattttagtaggattgagaatcacatcgcta |
23398193 |
T |
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| Q |
160 |
acttgcaaacattttttagtagaaactatatatctacaat-aaaagtctagtttctcttacat |
221 |
Q |
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| T |
23398194 |
acttgcaaacattttttagtagaaac----tatctacaataaaaagtctagtttctcctacat |
23398252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 60 - 288
Target Start/End: Complemental strand, 160838 - 160615
Alignment:
| Q |
60 |
taacttgatgcctaagttagtcaatgaaaacgttgagactacgctaaaagagataactctatagacttcaattttagtaggattgagaatcacattgcta |
159 |
Q |
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|||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||| ||||| ||||||||||||||||||| ||||||||||| | || |
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| T |
160838 |
taacttgatgcctaagttggtcaatgaaaacgtcgagacaaccctaaa-gagataaatctattaacttcaattttagtaggatcgagaatcacatagata |
160740 |
T |
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| Q |
160 |
acttgcaaacattttttagtagaaactatatatctacaataaaagtctagtttctcttacatttttacaacatcattcacgaaggacatgctacttgcca |
259 |
Q |
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||| ||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| |
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| T |
160739 |
actcgcaaacattttttagaagaaactat----ctacaataaatgtctagtttctcttacatttttacaacatcattcacaaaggacatactatttgcca |
160644 |
T |
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| Q |
260 |
acttttacgacatcaagaatcgaattaag |
288 |
Q |
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| T |
160643 |
gcttttacgacatcaagaatcgaattaag |
160615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 289 - 480
Target Start/End: Complemental strand, 160429 - 160236
Alignment:
| Q |
289 |
cacatgaaacatgcattttcaaccttcttttaaacgtattatacagnnnnnnnttagaaggaaaacagaatcaagataaatatgtacctcaatcccatac |
388 |
Q |
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| T |
160429 |
cacatgaaacatgcattttcatccttcttttcaacgtattatacataacaaaattagaaggaaaacataatcaagataaatatgtacctcaatcctattc |
160330 |
T |
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| Q |
389 |
atgataggcatttccttatccacgagaataatgtcaaatctttgactac--caatgattatctacagcttccttgccattttttacagcttcat |
480 |
Q |
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| T |
160329 |
atgataggaatttccttatccacgagagtaatgtcaaatcttttaccactggaatgaatacctacaacttccttaccattttttacagcttcat |
160236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 364 - 479
Target Start/End: Original strand, 39635897 - 39636014
Alignment:
| Q |
364 |
ataaatatgtacctcaatcccatacatgataggcatttccttatccacgagaataatgtcaaatctttgac--taccaatgattatctacagcttccttg |
461 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||| | ||||| ||||||||||||| || |
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| T |
39635897 |
ataactatgtacctcaatcccattcatgataggcatttccttatccatgagaataatatcaaatctttgaccattgcaatggatatctacagcttcttta |
39635996 |
T |
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| Q |
462 |
ccattttttacagcttca |
479 |
Q |
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| T |
39635997 |
ccattttttacagcttca |
39636014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 292
Target Start/End: Original strand, 39635451 - 39635597
Alignment:
| Q |
141 |
attgagaatcacattgctaacttgcaaacattttttagtagaaactatatatctacaataaaagtctagtttctcttacatttttacaacatcattcacg |
240 |
Q |
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||||||||||||| |||| ||||||||||||||||| |||||| |||||||| |||||| | |||||||| || | |||||| |||||| ||| |
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| T |
39635451 |
attgagaatcacacagctaccttgcaaacattttttaaaagaaac----tatctacagtaaaagcccagtttctcctaattctttacagcatcatccac- |
39635545 |
T |
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| Q |
241 |
aaggacatgctacttgccaacttttacgacatcaagaatcgaattaagcaca |
292 |
Q |
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|| | |||||||||||| | ||||||| |||||||||| |||||||||||| |
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| T |
39635546 |
aaagccatgctacttgctagcttttacagcatcaagaatggaattaagcaca |
39635597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 39635314 - 39635397
Alignment:
| Q |
60 |
taacttgatgcctaagttagtcaatgaaaacgttgagactacgctaaaagagataactctatagacttcaattttagtaggattg |
144 |
Q |
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||||||||||||||||||||| ||||||| |||| ||||||| || |||||||||| ||| ||||||| |||||||||| |||| |
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| T |
39635314 |
taacttgatgcctaagttagttaatgaaagcgtttagactactct-aaagagataaatctgtagacttggattttagtagcattg |
39635397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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